updated 1 hour ago by
Jouni Sirén
▴
630
•
written 5 days ago by
zhengluo
•
0
0
votes
1
reply
225
views
0
votes
0
replies
45
views
9 hours ago by
雨
▴
20
0
votes
1
reply
143
views
updated 10 hours ago by
Rory Stark
★
2.1k
•
written 16 hours ago by
buffealo
▴
130
1
vote
7
replies
1.4k
views
77
votes
30
replies
31k
views
18 follow
updated 15 hours ago by
Paulo
•
0
•
written 11.1 years ago by
Istvan Albert
102k
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
4
replies
151
views
0
votes
0
replies
65
views
14 hours ago by
Franck
•
0
1
vote
4
replies
220
views
17 hours ago by
dk7258859
•
0
0
votes
8
replies
205
views
updated 9 hours ago by
Pierre Lindenbaum
165k
•
written 17 hours ago by
totoroGirl
•
0
4
votes
5
replies
158
views
0
votes
1
reply
124
views
updated 21 hours ago by
i.sudbery
21k
•
written 1 day ago by
Alana Conceição Maia Lessa
•
0
0
votes
1
reply
121
views
updated 22 hours ago by
colindaven
7.3k
•
written 1 day ago by
gulin
•
0
0
votes
5
replies
180
views
updated 19 hours ago by
GenoMax
150k
•
written 23 hours ago by
paulanavarrete116
•
0
2
votes
2
replies
206
views
0
votes
0
replies
100
views
1 day ago by
kbranger
•
0
8
votes
12
replies
335
views
0
votes
3
replies
150
views
1
vote
2
replies
158
views
0
votes
2
replies
151
views
1
vote
1
reply
103
views
0
votes
2
replies
124
views
1
vote
5
replies
355
views
1
vote
1
reply
120
views
2
votes
2
replies
257
views
8 hours ago by
Jl
•
0
1
vote
3
replies
163
views
0
votes
1
reply
129
views
updated 1 day ago by
lieven.sterck
15k
•
written 1 day ago by
Naila
•
0
1
vote
4
replies
177
views
1 day ago by
SomeOne
▴
170
1
vote
7
replies
248
views
updated 1 day ago by
yura.grabovska
▴
750
•
written 1 day ago by
zhang616123
•
0
0
votes
3
replies
185
views
updated 1 day ago by
Bastien Hervé
6.2k
•
written 1 day ago by
Jonathan Yoou
▴
70
0
votes
0
replies
103
views
1 day ago by
soledad.esteban
•
0
0
votes
4
replies
181
views
1
vote
14
replies
507
views
updated 2 days ago by
colindaven
7.3k
•
written 2 days ago by
ZuelTech
•
0
1
vote
4
replies
1.1k
views
updated 2 days ago by
swbarnes2
14k
•
written 4 days ago by
Wu-Sheng Zhang
•
0
1
vote
4
replies
248
views
3
votes
8
replies
287
views
0
votes
1
reply
169
views
updated 2 days ago by
chrchang523
11k
•
written 2 days ago by
Smilesky
•
0
0
votes
0
replies
110
views
0
votes
0
replies
123
views
2 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
183
views
0
votes
0
replies
127
views
1
vote
0
replies
218
views
0
votes
2
replies
315
views
0
votes
0
replies
214
views
updated 4 days ago by
Pierre Lindenbaum
165k
•
written 4 days ago by
swarnadurga66666m
•
0
0
votes
1
reply
250
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
Yongjie Zhang
▴
110
0
votes
1
reply
256
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
Yongjie Zhang
▴
110
2
votes
3
replies
2.3k
views
updated 4 days ago by
Dan A
•
0
•
written 3.7 years ago by
Agenor Neto
▴
10
1
vote
1
reply
279
views
0
votes
2
replies
355
views
updated 5 days ago by
Istvan Albert
102k
•
written 5 days ago by
louis-gil
•
0
2
votes
1
reply
469
views
Recent Votes
Recent Locations •
All
Switzerland, 2 minutes ago
Bologna, 5 minutes ago
Switzerland, 8 minutes ago
Italy, 9 minutes ago
Russia, 14 minutes ago
France, 20 minutes ago
Norway stands with Ukraine, 22 minutes ago
Recent Awards •
All
Scholar to
Jouni Sirén
▴
630
Popular Question to
雨
▴
20
Popular Question to
karlensberg
•
0
Popular Question to
buffealo
▴
130
Voter to
Maxime Garcia
▴
350
Popular Question to
A_heath
▴
170
Popular Question to
totoroGirl
•
0
Recent Replies
Comment: Checking sex of a sample with sequencing data
by
xqyn
▴
30
Yes, I have checked the signal on chrY data. The problem is that the sample have the peak signals for chrY in ATAC-seq data; however, it al…
Answer: Question about `vg construct`
by
Jouni Sirén
▴
630
GBWT construction from a VCF expects that the paths representing variants are named by the hash of the variant rather than its identifier. …
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Have you considered contacting PacBio support? If they have any specific explanations please come back to this thread to add them here.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
Yes, I am referring to PacBio HiFi data (even though original question was about nanopore data)
Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
by
shpak.max
▴
50
Thank you for the reference, I'll look into it.
Incidentally, among other issues, UCSC Table browser feature seems to be buggy - for about…
Comment: Find the reads which correspond to DP of vcf
by
Pierre Lindenbaum
165k
very strange. Can you please , upload the file below in a new issue : https://github.com/lindenb/jvarkit/issues
```
samtools view -h in.b…
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Original question was about nanopore data. Are you referring to PacBio HiFi data?
Answer: DiffBind normalization error: invalid argument type (list) - cannot make it work
by
Rory Stark
★
2.1k
If your peaks are in `narrowPeak` format, it may help to set the `PeakCaller` to `"narrow"`.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
@Matt -- Hi, did you figure out about the cause of poly-A spike in your reads? I have similar problem in genomic HiFi reads.
Comment: Find the reads which correspond to DP of vcf
by
totoroGirl
•
0
Okay so I used the command which you mentioned earlier, since I only want the reads which have a G to T substitution, I parsed the output s…
Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
by
Paulo
•
0
Hi Istvan!
This was exactly what I was looking for! Amazing how 11 years after, this post is still usefull and active :)
I have a que…
Comment: Larger genome size than expected-please help
by
GenoMax
150k
> The problem is that they all have many contigs (over 300)
That may indicate that these may not be "complete/reference" quality. How many…
Answer: Larger genome size than expected-please help
by
Istvan Albert
102k
Genome assembly is still a trial and error process, but getting 39 million genomes for a 34-million-long expectation is not too bad.
Oft…
Comment: Larger genome size than expected-please help
by
alexandrakortsi
•
0
Because it is a very common species and there are 15 available genomes around the size i mentioned. The problem is that they all have many …
Traffic: 2708 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6