0
votes
0
replies
40
views
0
votes
1
reply
375
views
0
votes
0
replies
50
views
10 hours ago by
Physalia-courses
★
2.6k
0
votes
4
replies
1.9k
views
updated 17 hours ago by
1364454115
•
0
•
written 8.4 years ago by
Edalat
▴
30
838
votes
170
replies
179k
views
112 follow
updated 5 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
0
replies
64
views
0
votes
1
reply
116
views
updated 1 day ago by
GenoMax
151k
•
written 1 day ago by
michael.dhar
•
0
2
votes
4
replies
448
views
0
votes
2
replies
187
views
0
votes
0
replies
97
views
7
votes
5
replies
250
views
updated 1 day ago by
GenoMax
151k
•
written 1 day ago by
sarahmanderni
▴
130
0
votes
0
replies
88
views
0
votes
1
reply
140
views
0
votes
0
replies
87
views
5
votes
4
replies
556
views
0
votes
1
reply
137
views
2
votes
2
replies
1.7k
views
4
votes
2
replies
188
views
1 day ago by
ATS
▴
10
1
vote
4
replies
220
views
0
votes
0
replies
120
views
0
votes
0
replies
117
views
2 days ago by
Physalia-courses
★
2.6k
0
votes
1
reply
151
views
updated 2 days ago by
ATpoint
88k
•
written 2 days ago by
radwa_noreen
•
0
0
votes
3
replies
262
views
0
votes
1
reply
182
views
4
votes
3
replies
317
views
updated 2 days ago by
colindaven
7.6k
•
written 3 days ago by
genomics_student
•
0
0
votes
1
reply
185
views
updated 2 days ago by
marco.barr
▴
170
•
written 2 days ago by
Kelly
•
0
2
votes
3
replies
568
views
2 days ago by
lijiangres
▴
20
0
votes
0
replies
156
views
2 days ago by
Gordon Smyth
★
8.1k
0
votes
0
replies
146
views
1
vote
3
replies
260
views
updated 2 days ago by
ATpoint
88k
•
written 3 days ago by
rajdeepboral00
▴
70
0
votes
1
reply
189
views
2
votes
8
replies
459
views
updated 2 days ago by
GenoMax
151k
•
written 4 days ago by
Luca Arbore
▴
10
1
vote
7
replies
2.4k
views
2
votes
2
replies
254
views
3 days ago by
Andrew
•
0
1
vote
1
reply
173
views
0
votes
0
replies
158
views
3 days ago by
Physalia-courses
★
2.6k
1
vote
0
replies
196
views
0
votes
0
replies
154
views
2
votes
1
reply
202
views
updated 3 days ago by
Mensur Dlakic
★
29k
•
written 3 days ago by
marongiu.luigi
▴
740
0
votes
0
replies
164
views
updated 1 day ago by
colindaven
7.6k
•
written 3 days ago by
marongiu.luigi
▴
740
0
votes
0
replies
155
views
3 days ago by
this_is_me_trying
•
0
0
votes
3
replies
787
views
0
votes
3
replies
487
views
0
votes
1
reply
400
views
updated 3 days ago by
agis.maulana12
•
0
•
written 8 days ago by
Wenhai
•
0
3
votes
4
replies
350
views
updated 3 days ago by
GenoMax
151k
•
written 3 days ago by
anthony.santana.703.j
▴
30
1
vote
3
replies
336
views
updated 1 day ago by
LChart
5.0k
•
written 4 days ago by
ton_of_questions
•
0
7
votes
6
replies
391
views
updated 4 days ago by
colindaven
7.6k
•
written 4 days ago by
SomeOne
▴
180
0
votes
1
reply
310
views
updated 4 days ago by
shenwei356
8.7k
•
written 4 days ago by
curiousfellow@123
•
0
7
votes
2
replies
509
views
updated 4 days ago by
colindaven
7.6k
•
written 10 days ago by
anna
▴
70
2
votes
1
reply
323
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 5 days ago by
Rushikesh
▴
10
Recent Votes
Recent Locations •
All
United States, 1 minute ago
Germany, 6 minutes ago
India, 10 minutes ago
Bologna, 20 minutes ago
United Kingdom, 30 minutes ago
UCLA, 34 minutes ago
United Kingdom, 35 minutes ago
Recent Awards •
All
Popular Question to
Tundup
▴
10
Popular Question to
Physalia-courses
★
2.6k
Popular Question to
gernophil
▴
120
Popular Question to
curious
▴
890
Popular Question to
camillab.
▴
160
Commentator to
GenoMax
151k
Popular Question to
Ian
6.1k
Recent Replies
Answer: HOMER findMotifsGenome.pl failed compilation
by
文杰
•
0
I use the commamd `conda install perl==5.32.1 ` solve this problem
Comment: normalize between 2 different platform
by
1364454115
•
0
Hello,
Could you please tell me whether different datesets generated by multiplex PCR and 5'UMI-tagged 5′-RACE can be analyzed together? T…
Comment: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
gynecoloji
•
0
Thanks for your response.
I think it may be better to keep those repetitive regions and only filter out the blacklisted regions.
This is a …
Comment: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
jared.andrews07
★
18k
IDR addresses a different problem than removal of reads aligning to blacklist reads, though it's unquestionably useful for deriving more ro…
Comment: Issue with Package installation in R.
by
GenoMax
151k
Simply posting a snippet of error message in a question is the reason you have not received any responses.
Please make an effort to formu…
Answer: Building database with snpEff -- -gtf22 option not recognized/file not read
by
michael.dhar
•
0
Based on the ordering of the commands here: https://github.com/pcingola/SnpEff/issues/583
I believe I just needed to place the "build" c…
Comment: WGCNA blockwiseModules function for small datasets
by
ATS
▴
10
That's great to know. Thanks for your input!
Answer: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
LChart
5.0k
It should be noted that concerns about mapping artifacts in ChIP-seq really come from an era where reads were 36bp (or even 25bp!) in lengt…
Comment: WGCNA pickSoftThreshold problem
by
LChart
5.0k
AGain you seem to be over-filtering. Your mean.k and median.k are really low, so I think the number of input genes you used for this is ver…
Answer: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
jared.andrews07
★
18k
I am going to guess you've seen/thoroughly read [this paper about the ENCODE blacklist regions](https://www.nature.com/articles/s41598-019-…
Comment: Using VEP custom input
by
Sd
•
0
Initially, I converted the file to GFF3 format in order to run VEP, but I got warnings and couldn’t figure out what the problem was.
GFF…
Comment: nanopore unaligned bam files
by
colindaven
7.6k
When you have a bam make sure you check the methyl tags MM and ML are present. Something like
samtools view -h x.bam | grep MM
sam…
Comment: nanopore unaligned bam files
by
sarahmanderni
▴
130
yes keeping both mapping info and methylation info at the same time is the intention. Thanks so much for the reosponse! I will try it
Comment: nanopore unaligned bam files
by
GenoMax
151k
> OP wants to align AND keep the methylation info
Then use something like
minimap2 -t use_N_cores -Y -y -ax map-ont your_minimap_ind…
Comment: nanopore unaligned bam files
by
lieven.sterck
15k
I think OP wants to align AND keep the methylation info, which is indeed the tricky part ...
Not entirely sure but I think the `dorado ali…
Traffic: 1740 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6