6 hours ago by
Charles-Alexandre Roy
▴
50
0
votes
0
replies
43
views
0
votes
2
replies
126
views
updated 11 hours ago by
Istvan Albert
102k
•
written 15 hours ago by
louis-gil
•
0
2
votes
5
replies
249
views
0
votes
1
reply
369
views
835
votes
169
replies
171k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
1
vote
2
replies
175
views
0
votes
3
replies
1.4k
views
updated 20 hours ago by
Bastien Hervé
6.2k
•
written 22 months ago by
Sun
•
0
0
votes
0
replies
94
views
0
votes
2
replies
492
views
3
votes
4
replies
3.1k
views
8
votes
3
replies
218
views
1
vote
1
reply
126
views
updated 1 day ago by
Ram
45k
•
written 1 day ago by
reddyraghuveer664
•
0
0
votes
0
replies
93
views
0
votes
1
reply
127
views
updated 1 day ago by
GenoMax
150k
•
written 1 day ago by
Placeholder@12654926
•
0
0
votes
1
reply
155
views
1
vote
1
reply
160
views
3
votes
2
replies
199
views
0
votes
0
replies
109
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
laurasachica7
•
0
0
votes
4
replies
3.1k
views
updated 2 days ago by
Ram
45k
•
written 8.3 years ago by
roz_safavi
•
0
3
votes
6
replies
317
views
1
vote
0
replies
181
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
ilaria.palmisano
▴
10
3
votes
4
replies
255
views
1
vote
4
replies
331
views
2 days ago by
Basti
★
2.0k
0
votes
1
reply
168
views
0
votes
5
replies
361
views
0
votes
0
replies
127
views
0
votes
0
replies
161
views
updated 1 day ago by
Ram
45k
•
written 3 days ago by
Genomancer
•
0
2
votes
3
replies
254
views
0
votes
8
replies
2.9k
views
6 follow
1
vote
2
replies
528
views
1
vote
6
replies
370
views
updated 1 day ago by
andres.firrincieli
3.9k
•
written 3 days ago by
shevch2009
•
0
0
votes
2
replies
229
views
0
votes
5
replies
329
views
updated 2 days ago by
Michael
55k
•
written 3 days ago by
frarodmar17
•
0
2
votes
5
replies
318
views
updated 1 day ago by
jared.andrews07
★
18k
•
written 3 days ago by
carolofharvest
▴
50
0
votes
1
reply
326
views
updated 3 days ago by
Elisabeth Gasteiger
★
2.4k
•
written 7 days ago by
timothy.kirkwood
▴
140
4
votes
6
replies
337
views
1
vote
2
replies
374
views
15
votes
12
replies
707
views
7 follow
Forum:
Reproducibility Crisis
6
votes
13
replies
7.4k
views
7 follow
0
votes
3
replies
252
views
2
votes
2
replies
250
views
1
vote
5
replies
1.2k
views
updated 6 weeks ago by
zhbyrd
•
0
•
written 9 months ago by
Mr. George
▴
10
1
vote
2
replies
287
views
3
votes
5
replies
430
views
updated 3 days ago by
LauferVA
4.6k
•
written 4 days ago by
bioinfo1990
▴
10
2
votes
3
replies
369
views
4
votes
4
replies
339
views
2
votes
2
replies
393
views
updated 1 day ago by
Ram
45k
•
written 4 days ago by
ahmad79rezahay
•
0
0
votes
0
replies
187
views
4 days ago by
Physalia-courses
★
2.6k
4
votes
8
replies
598
views
6
votes
5
replies
376
views
Recent Votes
Recent Locations •
All
Bologna, 17 minutes ago
India, 26 minutes ago
Unknown, 34 minutes ago
Palau, 42 minutes ago
China, 52 minutes ago
Hong Kong, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
priyankap079
•
0
Popular Question to
SHXVRR
▴
20
Popular Question to
shelkmike
★
1.5k
Popular Question to
namck
•
0
Popular Question to
louis-gil
•
0
Recent Replies
Comment: Associating VDJ clonotyping data with scRNA-seq in Seurat
by
garcesj
▴
50
It's a great workaround. My only question is about just removing the duplicates (`tcr <- tcr[!duplicated(tcr$barcode), ]`). Aren't we losin…
Comment: Discrepancy between BAM and vcf
by
Istvan Albert
102k
I will also say that if you take any variant caller and then look at the corresponding BAM file, you'll find many minor inconsistencies - i…
Comment: Lift over of GWAS summary stat file from Hg38 to Hg19
by
Mllepnos
•
0
Thanks a lot for the recommendation to use bcftools +munge and +liftover instead of UCSC liftOver — I’ll definitely try that!
Comment: Discrepancy between BAM and vcf
by
GenoMax
150k
You could write to Illumina tech support and ask for resources that explain the default parameters for SNP calling/filtering in DRAGEN pipe…
Comment: Error gmx_mmpbsa: LP pseudo-atom is not supported
by
namck
•
0
Hi @bhavya2269, did you find any solution to this? I'm getting a similar error.
Comment: Question about `vg giraffe`
by
GenoMax
150k
You recent posts appear to be unrelated to the original question. If that is correct please post new questions in new threads. Posting unre…
Comment: Seeking Guidance on Selecting Control ChIP Sequences for nf-core/chipseq Pipelin
by
mark.ziemann
★
2.0k
These are not really technical replicates if they simply re-sequenced the same library three times. Resequencing multiplexed libraries on d…
Comment: Question about `vg giraffe`
by
zhengluo
•
0
```
vg construct --reference ref.fa --vcf test.vcf.gz --alt-paths-plain --handle-sv --flat-alts --progress -t 100 > test.vg
vg index --xg…
Answer: Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
by
wessel.willemsen
•
0
I had the same problem as you but i solved it by allowing the reads to map to more targets. By default mapper.pl does not allow a read to m…
Comment: Question about `vg giraffe`
by
zhengluo
•
0
Given a sample (sample1) with 100 insertions relative to the reference genome, can I identify which reads in the BAM file aligned to these …
Comment: Question about `vg giraffe`
by
zhengluo
•
0
I directly constructed the graph using VCF files and reference genome sequences through `vg construct`, but after converting it to GFA form…
Comment: How to introduce normalized and scaled seurat data into monocle 3?
by
Bastien Hervé
6.2k
For OP's question, my guess is that they got NA's because `ScaleData` is only called on the `VariableFeatures` found the step before.
Try …
Answer: How to align library of highly similar sequences
by
ATpoint
87k
You need to deviate from the defaults of the aligner to enforce that only perfect matches are counted. Basically, and I use bowtie2 for pur…
Answer: Question about `vg giraffe`
by
Jouni Sirén
▴
610
The easiest way is to align the reads to the graph in GAM or GAF format. Then you select sample `sample` as the reference using `vg gbwt`:
…
Answer: How to introduce normalized and scaled seurat data into monocle 3?
by
Reza
•
0
I have a same question it seems that when we use the preprocess_cds() function, it does not save the normalized data directly in a separate…
Traffic: 1380 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6