1
vote
2
replies
74
views
0
votes
0
replies
44
views
836
votes
167
replies
173k
views
111 follow
updated 3 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
0
votes
0
replies
63
views
0
votes
0
replies
61
views
0
votes
1
reply
143
views
updated 16 hours ago by
Istvan Albert
102k
•
written 1 day ago by
Eltercertopico
•
0
1
vote
4
replies
308
views
14 hours ago by
Fatemeh
▴
40
0
votes
1
reply
107
views
updated 17 hours ago by
Bastien Hervé
6.2k
•
written 21 hours ago by
Bioinformatics_16
•
0
0
votes
0
replies
72
views
0
votes
1
reply
121
views
4
votes
2
replies
219
views
1
vote
7
replies
331
views
0
votes
0
replies
70
views
0
votes
3
replies
172
views
0
votes
2
replies
159
views
1
vote
4
replies
223
views
3
votes
2
replies
228
views
0
votes
0
replies
111
views
0
votes
1
reply
141
views
0
votes
2
replies
203
views
1
vote
1
reply
311
views
updated 2 days ago by
Gordon Smyth
★
7.9k
•
written 7 days ago by
Gerard
▴
10
0
votes
0
replies
152
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
Shicheng Guo
★
9.6k
1
vote
2
replies
505
views
4
votes
10
replies
827
views
6 follow
updated 2 days ago by
cmdcolin
★
4.2k
•
written 12 days ago by
jahnreinhard.ringger
•
0
0
votes
0
replies
140
views
2
votes
3
replies
596
views
updated 2 days ago by
Hao
▴
10
•
written 2.6 years ago by
shangguandong1996
▴
30
1
vote
2
replies
355
views
2
votes
9
replies
573
views
updated 1 day ago by
Istvan Albert
102k
•
written 5 days ago by
megancgrdnr
•
0
3
votes
0
replies
156
views
1
vote
2
replies
304
views
1
vote
1
reply
246
views
1
vote
0
replies
128
views
1
vote
2
replies
256
views
updated 1 day ago by
Ram
45k
•
written 3 days ago by
noodlejackson
▴
40
1
vote
1
reply
182
views
0
votes
0
replies
139
views
3
votes
4
replies
316
views
14
votes
3
replies
11k
views
0
votes
3
replies
340
views
0
votes
2
replies
915
views
updated 3 days ago by
Mensur Dlakic
★
29k
•
written 5.9 years ago by
Kanoo
•
0
0
votes
2
replies
286
views
3
votes
4
replies
333
views
updated 1 day ago by
Ram
45k
•
written 4 days ago by
matthewmerkin32
•
0
0
votes
0
replies
188
views
updated 1 day ago by
Ram
45k
•
written 4 days ago by
Amos Bairoch
▴
130
0
votes
0
replies
426
views
5
votes
5
replies
497
views
3 days ago by
Fatemeh
▴
40
0
votes
4
replies
433
views
updated 4 days ago by
pinheirofabiano
▴
110
•
written 7 days ago by
majorprogeria
•
0
0
votes
1
reply
253
views
1
vote
10
replies
637
views
3
votes
3
replies
293
views
5 days ago by
pinheirofabiano
▴
110
0
votes
0
replies
199
views
5 days ago by
Ana
▴
10
Recent Votes
Recent Locations •
All
United States, 6 minutes ago
Colombia, 11 minutes ago
India, 16 minutes ago
Bologna, 17 minutes ago
Russia, 29 minutes ago
Germany, 35 minutes ago
Singapore, 48 minutes ago
Recent Awards •
All
Popular Question to
Sd
•
0
Popular Question to
resug
▴
40
Popular Question to
tacrolimus
▴
150
Popular Question to
anasjamshed
▴
140
Popular Question to
marco.barr
▴
170
Recent Replies
Comment: Does vg giraffe output secondary and supplimentary alignments?
by
lushjia
•
0
Thank you so much for the information! It's really helpful!
Answer: Does vg giraffe output secondary and supplimentary alignments?
by
Jouni Sirén
▴
650
There is option `--max-multimaps INT`, which makes Giraffe output at most `INT` alignments for each read. We don't really test it, but it s…
Comment: How do I figure out pangenome location of hg38 coordinates?
by
lushjia
•
0
There should be GRCh38 paths in the pggb graph. You can check the paths in the graph by extracting P or W lines:
> zcat <gfa.gz> | grep …
Comment: Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-
by
GenoMax
150k
> I tried HAC & SUP both did not work for me.
What did not work? You actually need to recall the bases using HAC/SUP models and `dorado` b…
Comment: Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-
by
Anurag
•
0
hey, thank you for reply still i am getting same error.
Comment: Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-
by
Anurag
•
0
Thank you for replying and the tip! I tried HAC & SUP both did not work for me.
Comment: SyntaxError in file /snakefile, line 22: invalid decimal literal: None
by
Jesse
▴
870
That all makes sense! My best guess is something totally unexpected from somewhere else in the file and it's reporting the wrong line. (I…
Comment: protease candidates for my protein of interest
by
Fatemeh
▴
40
Thanks very much, but this only gives some bacterial enzymes that can cut my protein, unfortunately.
I was thinking maybe there are some p…
Answer: Detection SNPs and Indels Bacteria
by
Istvan Albert
102k
The breseq pipeline is a good start
https://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing
other alternatives exi…
Comment: protease candidates for my protein of interest
by
GenoMax
150k
Not as comprehensive as above but there is also `pepdigest` from EMBOSS: https://www.bioinformatics.nl/cgi-bin/emboss/pepdigest
Comment: Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-
by
GenoMax
150k
If you have the run data folder available then you should go back and re-call the bases using either HAC (high accuracy) or preferably SUP …
Answer: protease candidates for my protein of interest
by
Elisabeth Gasteiger
★
2.4k
Have you tried PeptideCutter? https://web.expasy.org/peptide_cutter/
Comment: Help with Panel of Normal (PON)
by
GenoMax
150k
There were two opinions about this in a past thread: https://www.biostars.org/p/9575107/
You can find the 1000 genomes hg38 PON here: http…
Comment: Different number of fragments after doublets removal in each run
by
Bastien Hervé
6.2k
Could you elaborate a bit more on your issue and add your code to your post ?
Comment: protease candidates for my protein of interest
by
Fatemeh
▴
40
Is there anyone that can help me?
Traffic: 1834 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6