Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
120,022 results • Page
1 of 2401
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
12
views
News:
Pangenomix Ltd : A bioinformatics consulting venture
bioinformatics
microbial
genomics
Consulting
51 minutes ago by
Nitin
• 0
1
vote
5
replies
136
views
Integrating gene ontology DB's into pipeline scripts
DAVID
Pipelines
GO
51 minutes ago by
joemrosen
• 0
0
votes
3
replies
103
views
homer installation
homer
updated 6 hours ago by
GenoMax
148k • written 8 hours ago by
leslielebon
• 0
0
votes
1
reply
65
views
Advaita iPathwayGuide - How many GO modules are possible for each gene?
Gene-Ontology
Advaita
updated 6 hours ago by
Ram
44k • written 8 hours ago by
pbensing
• 0
825
votes
169
replies
163k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
3.3k • written 8.1 years ago by
Istvan Albert
102k
0
votes
1
reply
88
views
MAF tools - changing tumor sample barcode name
maf
updated 8 hours ago by
Istvan Albert
102k • written 14 hours ago by
Bine
▴ 90
3
votes
10
replies
488
views
Mouse genome featureCounts
GRCm39
RNA-seq
featureCounts
updated 9 hours ago by
Ram
44k • written 2 days ago by
rajdeepboral00
▴ 10
2
votes
4
replies
177
views
Convert bcf to vcf and run snp2hla tool in windows subsytem for linux
snp2hla
vcf
bcf
6 hours ago by
anasjamshed
▴ 140
0
votes
0
replies
45
views
Extracting coomon SNPs, medging SNP data from illumina platform and affymetrix (AXIOM SUITE).
Bovine
Axiom
Chip
Genotyping
12 hours ago by
Maxmangomo1997
• 0
0
votes
0
replies
51
views
How to Perform Lineage Analysis Using SNPs Derived from a De Novo Assembly?
Plink
Phylogenetics
VFC
Lineage
Lineage-analysis
12 hours ago by
alex
• 0
1
vote
0
replies
96
views
Job:
Job Opportunity - Remotely Allowed
data-analysis
environmental-science
R
SQL
Python
13 hours ago by
Federico
▴ 10
1
vote
2
replies
128
views
Seeking Access to Large-Scale Population Genomics Datasets for VCF Data Analysis
populationgenomics
genomes
vcf
genomics
updated 13 hours ago by
roalva1
▴ 90 • written 17 hours ago by
Rohan
▴ 40
1
vote
1
reply
102
views
How to get all chromosomes RefSeq ID from RefSeq assembly ID?
AssemblyAccession
Database
Entrez
RefSeq
NCBI
updated 14 hours ago by
GenoMax
148k • written 15 hours ago by
Maria
• 0
0
votes
5
replies
741
views
Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevant guides from fastq files?
Single-Cell
Perturb-Seq
10X
updated 16 hours ago by
ATpoint
86k • written 3 months ago by
jesswhitts
• 0
0
votes
0
replies
61
views
SNPnexus
SNPs
Histone
SNPnexus
Non-coding
modification
18 hours ago by
saira
• 0
0
votes
0
replies
72
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 10-12, 2025)
Workshop
RNAseq
Illumina
DNAseq
VariantCalling
20 hours ago by
ecSeq Bioinformatics
• 0
3
votes
10
replies
2.8k
views
TOM matrix generated by WGCNA package in R
WGCNA
updated 13 hours ago by
GenoMax
148k • written 2.9 years ago by
Dude
• 0
0
votes
1
reply
201
views
WIG files - bulk RNA-seq
RNAseq
WIG
normalisation
fastq
updated 1 day ago by
rfran010
★ 1.3k • written 3 days ago by
pinkclouds
• 0
1
vote
1
reply
134
views
Best Practices for ATACseq for Performing Differential Accessibility Analysis
differential-accessibility
csaw
DESeq2
ATACseq
updated 15 hours ago by
GenoMax
148k • written 1 day ago by
newbioinfograd2323
• 0
0
votes
2
replies
480
views
Recommended reliable enrichment tool
ontology
enrichr
enrichment
updated 1 day ago by
geneontologyhelp
▴ 420 • written 10 days ago by
noamizc
• 0
1
vote
3
replies
270
views
Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical Gene Sequence
bcftools
genome
vcf
wgs
21 hours ago by
Rohan
▴ 40
1
vote
5
replies
1.5k
views
6 follow
Comparing SV calls produced by VG call on a Minigraph-Cactus produced Pangenome Graph vs. a linear reference
minigraph-cactus
variant-calling
structural-variant
vg
updated 1 day ago by
GenoMax
148k • written 17 months ago by
peterdfields
▴ 30
10
votes
6
replies
334
views
7 follow
Forum:
Premade RNA-seq pipeline or custom
rna-seq
pipeline
updated 15 hours ago by
ATpoint
86k • written 1 day ago by
noodlejackson
▴ 20
4
votes
2
replies
173
views
MT and rRNA gene expression in bulk RNA-seq sample QC filtering
RNA-seq
18 hours ago by
noodlejackson
▴ 20
0
votes
1
reply
128
views
Pocket comparison of homologuos proteins suitable to inform mutagenesis
prokaryotes
structure
updated 1 day ago by
dthorbur
★ 2.6k • written 1 day ago by
Schmoho
▴ 10
0
votes
1
reply
128
views
What are your thoughts on automatic segmentation of metastases using Deep Learning Models?
metastases
deep-learning
updated 19 hours ago by
ATpoint
86k • written 1 day ago by
clara-28
• 0
1
vote
0
replies
103
views
Herald:
The Biostar Herald for Tuesday, January 07, 2025
herald
1 day ago by
Biostar
3.3k
2
votes
1
reply
199
views
Bulk-RNA-Seq integrate control samples.
modelmatrix
RNA-Seq
updated 1 day ago by
i.sudbery
21k • written 2 days ago by
fabian
• 0
4
votes
3
replies
177
views
How to check SRA file download possible corrupted?
sra
updated 1 day ago by
Istvan Albert
102k • written 1 day ago by
xqyn
▴ 30
7
votes
2
replies
220
views
How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genomes Project Phase 3 VCF?
samtools
bcftools
grch38
genome
vcf
21 hours ago by
Rohan
▴ 40
8
votes
4
replies
280
views
Forum:
A beginner's guide and In-depth exploration of AlphaFold
AlphaFold
ColabFold
updated 1 day ago by
Mensur Dlakic
★ 28k • written 1 day ago by
shravansaranyan
▴ 20
0
votes
0
replies
100
views
Is the significance of p-value between different ROC curves of machine learning models important?
ROC
pvalue
learning
python
machine
1 day ago by
egascon
▴ 60
0
votes
2
replies
155
views
Custom Database Kraken2 with Metagenomes
database
kraken2
18 hours ago by
alenew.am
▴ 10
0
votes
0
replies
96
views
NIPT data downstream interpretation
NIPT
1 day ago by
1769mkc
★ 1.2k
0
votes
0
replies
95
views
News:
In-Person Workshop: Bulk RNA-Seq Data Analysis Workshop (March 24 - 27, 2025 in Halle, Germany)
Transcriptomics
Workshop
RNA-Seq
1 day ago by
ecSeq Bioinformatics
• 0
2
votes
3
replies
178
views
Per base sequence content variation after doing fastqc
rna-seq
fastqc
updated 1 day ago by
GenoMax
148k • written 1 day ago by
Luna
• 0
0
votes
4
replies
741
views
Biopython installation error
biopython
updated 10 hours ago by
Wayne
★ 2.1k • written 7 weeks ago by
Oliver
• 0
0
votes
0
replies
101
views
Interpreting Varied Survival Times in TCGA-BRCA Data
Survival
Kaplan-Meier
TCGA
analysis
survival
curves
1 day ago by
Siqi
• 0
0
votes
0
replies
106
views
Using ANNOVAR to identify variants falling within ALU elements
ANNOVAR
2 days ago by
Aiswarya
▴ 20
0
votes
0
replies
118
views
Alluvial Plot of TCR Sequencing Data
TCRseq
alluvial-plot
updated 2 days ago by
Ram
44k • written 2 days ago by
ab39
• 0
4
votes
4
replies
270
views
single-cell data: Batch effects still there after integration
single-cell
integration
batch-effect
13 hours ago by
Penny
• 0
0
votes
1
reply
150
views
Methods for correlating clinical measures with gene expression?
rna-seq
correlation
updated 1 day ago by
ATpoint
86k • written 2 days ago by
Haad
• 0
0
votes
0
replies
126
views
Combining Datasets for an Interactome Analysis with CellChat
R
Single-cell
Interactome
CellChat
updated 2 days ago by
GenoMax
148k • written 2 days ago by
Draka
• 0
2
votes
5
replies
226
views
How to Obtain Gene-Transcript Isoforms from RefSeq Format using a gff files as input?
gff
isoforms
refseq
2 days ago by
mauricio.1313
• 0
2
votes
6
replies
269
views
nanopore sequencing - fastp dedup option
fastp
nanopore
updated 1 day ago by
colindaven
7.0k • written 2 days ago by
HarperReed
• 0
0
votes
0
replies
117
views
News:
Cancer Genomics course - online 10-14 March
R
Cancer-Genomics
Tumor-Evolution
2 days ago by
Physalia-courses
★ 2.6k
12
votes
5
replies
2.7k
views
BD Rhapsody software - single cell seq
bd
rhapsody
single-cell
updated 2 days ago by
ATpoint
86k • written 20 months ago by
colindaven
7.0k
5
votes
6
replies
3.5k
views
7 follow
Detecting Structural variants in sequencing data
structural variants
sequencing
calling
SVs
updated 2 days ago by
GenoMax
148k • written 7.6 years ago by
Glen
▴ 30
0
votes
0
replies
273
views
Calculate allelic richness from vcf/plink data.
R
HierFstat
genepop
Ares
updated 6 hours ago by
Ram
44k • written 2 days ago by
K
• 0
0
votes
0
replies
117
views
filter_vep not filtering variants based on EAS_AF and gnomADe_EAS_AF as expected
wes
VCF
vep
variants
filter_vep
updated 2 days ago by
Ram
44k • written 2 days ago by
Ras
• 0
120,022 results • Page
1 of 2401
Recent Votes
Answer: Integrating gene ontology DB's into pipeline scripts
Comment: Per base sequence content variation after doing fastqc
Comment: Mouse_genome_featureCounts
Comment: Mouse_genome_featureCounts
Comment: Convert bcf to vcf and run snp2hla tool in windows subsytem for linux
Comment: single-cell data: Batch effects still there after integration
Comment: single-cell data: Batch effects still there after integration
Recent Locations •
All
Pakistan,
12 minutes ago
United States,
25 minutes ago
United States,
29 minutes ago
Paris,
42 minutes ago
United States,
48 minutes ago
United Kingdom,
53 minutes ago
kansas, usa,
57 minutes ago
Recent Awards •
All
Teacher
to
jared.andrews07
★ 18k
Teacher
to
Jeremy Leipzig
23k
Popular Question
to
Darked89
4.7k
Teacher
to
Pierre Lindenbaum
164k
Popular Question
to
roalva1
▴ 90
Popular Question
to
graeme.thorn
▴ 100
Scholar
to
andrew.j.skelton73
6.6k
Recent Replies
Comment: Integrating gene ontology DB's into pipeline scripts
by
joemrosen
• 0
Looks good, thanks for the tip!
Answer: Integrating gene ontology DB's into pipeline scripts
by
EagleEye
7.6k
Have a look at GeneSCF. It is easy to integrate in any bioinformatics pipelines.
Comment: Integrating gene ontology DB's into pipeline scripts
by
joemrosen
• 0
I tried the DAVID api but the output isnt very detailed, I'm not looking for simple gene annotation, I already have that with snpEff and ot…
Comment: homer installation
by
GenoMax
148k
Have you tried this basic configuration method: http://homer.ucsd.edu/homer/introduction/configure.html According to GPT the format of the…
Comment: Advaita iPathwayGuide - How many GO modules are possible for each gene?
by
GenoMax
148k
Since this is commercial software your best bet may be to contact their tech support to get prompt help. While you may get an answer here n…
Comment: Convert bcf to vcf and run snp2hla tool in windows subsytem for linux
by
anasjamshed
▴ 140
ok . how can I use snp2hla tool for impuation based on vcf files
Comment: homer installation
by
leslielebon
• 0
I tried but I obtained this error: Could not open configuration file (/software/homer//config.txt)
Comment: homer installation
by
GenoMax
148k
Have you tried to run `homer`? Perhaps the `config.txt` file is made when you run it the first time.
Answer: MAF tools - changing tumor sample barcode name
by
Istvan Albert
102k
the short answer is that you need to make the same change everywhere, either before or after loading the data in practice this probably …
Answer: Integrating gene ontology DB's into pipeline scripts
by
Istvan Albert
102k
There should be no need to scrape websites; there are a large number of tools that implement various ontology and functional annotation-rel…
Comment: Mouse_genome_featureCounts
by
GenoMax
148k
> N_noFeature 49636676 Looks like a large fraction of your reads do not map to known features (or could be mapping to rRNA/introns, which …
Comment: Mouse_genome_featureCounts
by
rajdeepboral00
▴ 10
N_unmapped 5008777 N_multimapping 3988726 N_noFeature 49636676 N_ambiguous 630120 This is the summary of my alignment for …
Comment: Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownam
by
James
• 0
I get the same error when running the constructNetworks function - I've also made sure that all gene IDs and sample names are unique I can…
Comment: Biopython installation error
by
Wayne
★ 2.1k
For more details on this issue, see [here](https://github.com/biopython/biopython/issues/4883#issuecomment-2480853918) and links therein fo…
Comment: Integrating gene ontology DB's into pipeline scripts
by
Pierre Lindenbaum
164k
why scraping as all those databases are available for download ? <!-- Does anybody have suggestions for integrating gene ontology DBs o…
Traffic: 2746 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6