0
votes
0
replies
50
views
8
votes
8
replies
492
views
6 follow
837
votes
170
replies
176k
views
112 follow
updated 12 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
0
votes
0
replies
55
views
10 hours ago by
adigershon8897
•
0
0
votes
4
replies
300
views
updated 10 hours ago by
Gordon Smyth
★
7.9k
•
written 3 days ago by
n_navy
•
0
0
votes
0
replies
66
views
0
votes
0
replies
75
views
0
votes
0
replies
87
views
updated 18 hours ago by
Ram
45k
•
written 1 day ago by
BhagyashreeWaghale
•
0
0
votes
0
replies
84
views
0
votes
0
replies
88
views
0
votes
0
replies
93
views
1 day ago by
Physalia-courses
★
2.6k
1
vote
5
replies
318
views
0
votes
3
replies
214
views
1
vote
2
replies
207
views
4
votes
4
replies
254
views
1
vote
1
reply
142
views
updated 1 day ago by
Alex Reynolds
36k
•
written 1 day ago by
zhang616123
•
0
0
votes
0
replies
125
views
1 day ago by
samuel.himes
•
0
0
votes
0
replies
106
views
0
votes
0
replies
114
views
10
votes
9
replies
4.8k
views
0
votes
2
replies
250
views
updated 1 day ago by
colindaven
7.4k
•
written 3 days ago by
lagartija
▴
160
0
votes
0
replies
124
views
1
vote
7
replies
2.4k
views
0
votes
2
replies
186
views
50 minutes ago by
Gordonz9494
•
0
2
votes
1
reply
197
views
0
votes
5
replies
330
views
updated 2 days ago by
Alex Reynolds
36k
•
written 3 days ago by
rxs1018
•
0
2
votes
4
replies
264
views
0
votes
1
reply
201
views
7
votes
6
replies
4.9k
views
4
votes
5
replies
448
views
updated 2 days ago by
Ram
45k
•
written 4 days ago by
Keem Uarren Eiryll
▴
10
4
votes
2
replies
214
views
3
votes
3
replies
431
views
updated 3 days ago by
colindaven
7.4k
•
written 8 days ago by
vikasmh111
•
0
0
votes
0
replies
147
views
3 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
978
views
2
votes
7
replies
417
views
0
votes
0
replies
177
views
0
votes
2
replies
263
views
3 days ago by
Sarah
•
0
0
votes
0
replies
178
views
1
vote
6
replies
1.1k
views
6 follow
updated 3 days ago by
Ram
45k
•
written 10 months ago by
guioliveirareis
▴
10
0
votes
0
replies
177
views
4 days ago by
Physalia-courses
★
2.6k
0
votes
1
reply
222
views
5
votes
3
replies
334
views
updated 3 days ago by
Alex Reynolds
36k
•
written 4 days ago by
Besoa
•
0
3
votes
8
replies
513
views
2
votes
1
reply
278
views
1
vote
0
replies
216
views
4 days ago by
zsc25001
▴
10
1
vote
1
reply
264
views
updated 4 days ago by
Ram
45k
•
written 5 days ago by
arthur_alexander83
•
0
4
votes
4
replies
398
views
Tool:
Gene Exons Painter
updated 4 days ago by
benformatics
4.1k
•
written 5 days ago by
Rafal
▴
70
0
votes
0
replies
214
views
5 days ago by
soledad.esteban
•
0
3
votes
1
reply
299
views
0
votes
0
replies
198
views
Recent Votes
Recent Locations •
All
France, 3 minutes ago
Bologna, 5 minutes ago
United Kingdom, 28 minutes ago
United States, 34 minutes ago
United States, 34 minutes ago
United States, 44 minutes ago
United States, 44 minutes ago
Recent Awards •
All
Commentator to
GenoMax
151k
Popular Question to
chuanj8848
•
0
Popular Question to
Physalia-courses
★
2.6k
Popular Question to
newbioinfograd2323
▴
10
Popular Question to
tsomakiank
▴
50
Popular Question to
sinha.shriprakash
▴
20
Popular Question to
DareDevil
★
4.4k
Recent Replies
Comment: HISAT2 with Cleaned Data
by
Gordonz9494
•
0
Hi,
Thank you for your comment.
Regarding your question about the "counts are too low," I’m working with the cleaned data provided by th…
Answer: Nextflow: split a FASTA file into 5 parts to enable parallel processing
by
neng
▴
30
Ok, I finally find the solution. I would like to share with you guys:
workflow {
// Step 7: split
SplitFasta(params.fasta)…
Answer: differential exon usage from Salmon outputs
by
Gordon Smyth
★
7.9k
If you want to detect differential splicing using edgeR with Salmon output, then you should do DTU instead of DEU, see:
Baldoni PL#, Chen …
Comment: Nextflow: split a FASTA file into 5 parts to enable parallel processing
by
neng
▴
30
Yeah, it's a good solution I've tried. The only problem is that the SplitFasta() process has to be finished before it starts, otherwise it …
Comment: differential exon usage from Salmon outputs
by
dsull
★
7.5k
Providing each exon as an individual transcript will throw off pseudoalignment-type algorithms which assume that each read originated from …
Comment: Create local Blast database alias with blastdb_aliastool fails
by
GenoMax
151k
Can you set the following variable and see if that helps.
BLASTDB=f:/BlastDB/nr/nr
export BLASTDB
Comment: building snpeff database for plant
by
analyst
▴
60
Is it safe to add -noCheckCds -noCheckProtein in the command or will it skip important information in the resultant database:
java -Xm…
Comment: Create local Blast database alias with blastdb_aliastool fails
by
etienne
•
0
Thank you. It is working now with:
blastdbcmd -db f:/BlastDB/nr/nr -taxids 1988 -out f:/BlastDB/extract/acti3.fa
But it displays thi…
Comment: Pathway enrichment analysis on time-series data by filtering out age comparisons
by
fullycratered
•
0
Ah that makes sense, I hadn't done the DE analysis myself in this case. I will look at doing that, thank you!
Comment: building snpeff database for plant
by
lieven.sterck
15k
I had a quick look and though it is feasible to change files (and specifically feature names) such that the files correspond to each other …
Comment: Nextflow: split a FASTA file into 5 parts to enable parallel processing
by
neng
▴
30
what I expected:
[part_001, /path/to/split/part_001.fasta]
[part_002, /path/to/split/part_002.fasta]
...
actually data stream…
Comment: STAR aligner - how is quality and correctness tested across builds/releases?
by
GenoMax
151k
> Coming from a software engineering background
Curious as to how many people were part of your team in (I assume) commercial software dev…
Comment: Nextflow: split a FASTA file into 5 parts to enable parallel processing
by
Pierre Lindenbaum
166k
I don't understand how your splitfasta works, the output should collect the files under "split". It should be something like:
```
process …
Comment: STAR aligner - how is quality and correctness tested across builds/releases?
by
Arthur
•
0
Fair question - I single out STAR as I believe it's a widely used tool, but I am curious across the board of these 'widely used bioinformat…
Comment: RNA-Sequencing Analysis when control samples paired-end and tumour samples singl
by
h
•
0
Thanks for both your help I will do that!
Traffic: 1632 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6