Tutorial:
energy minimisation
just now by
swarnadurga66666m
•
0
0
votes
0
replies
1
view
0
votes
0
replies
11
views
0
votes
0
replies
15
views
1 hour ago by
Yongjie Zhang
▴
110
2
votes
3
replies
2.1k
views
updated 1 hour ago by
Dan A
•
0
•
written 3.7 years ago by
Agenor Neto
▴
10
0
votes
1
reply
82
views
0
votes
0
replies
30
views
835
votes
169
replies
171k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
2
replies
138
views
updated 17 hours ago by
Istvan Albert
102k
•
written 21 hours ago by
louis-gil
•
0
2
votes
2
replies
279
views
0
votes
1
reply
379
views
1
vote
2
replies
191
views
0
votes
3
replies
1.4k
views
updated 1 day ago by
Bastien Hervé
6.2k
•
written 22 months ago by
Sun
•
0
0
votes
0
replies
102
views
0
votes
2
replies
556
views
3
votes
4
replies
3.1k
views
8
votes
3
replies
230
views
1
vote
1
reply
134
views
updated 1 day ago by
Ram
45k
•
written 1 day ago by
reddyraghuveer664
•
0
0
votes
0
replies
100
views
0
votes
1
reply
136
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
Placeholder@12654926
•
0
0
votes
1
reply
163
views
1
vote
1
reply
169
views
3
votes
2
replies
207
views
0
votes
0
replies
115
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
laurasachica7
•
0
0
votes
4
replies
3.1k
views
updated 2 days ago by
Ram
45k
•
written 8.3 years ago by
roz_safavi
•
0
3
votes
6
replies
330
views
1
vote
0
replies
189
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
ilaria.palmisano
▴
10
3
votes
4
replies
265
views
1
vote
4
replies
344
views
2 days ago by
Basti
★
2.0k
0
votes
1
reply
174
views
0
votes
5
replies
370
views
0
votes
0
replies
134
views
0
votes
0
replies
168
views
updated 1 day ago by
Ram
45k
•
written 3 days ago by
Genomancer
•
0
2
votes
3
replies
264
views
0
votes
8
replies
2.9k
views
6 follow
1
vote
2
replies
536
views
1
vote
6
replies
385
views
updated 1 day ago by
andres.firrincieli
3.9k
•
written 3 days ago by
shevch2009
•
0
0
votes
2
replies
237
views
0
votes
5
replies
338
views
updated 3 days ago by
Michael
55k
•
written 3 days ago by
frarodmar17
•
0
2
votes
5
replies
331
views
updated 1 day ago by
jared.andrews07
★
18k
•
written 3 days ago by
carolofharvest
▴
50
0
votes
1
reply
334
views
updated 4 days ago by
Elisabeth Gasteiger
★
2.4k
•
written 7 days ago by
timothy.kirkwood
▴
140
4
votes
6
replies
351
views
1
vote
2
replies
380
views
15
votes
12
replies
721
views
7 follow
Forum:
Reproducibility Crisis
6
votes
13
replies
7.4k
views
7 follow
0
votes
3
replies
262
views
2
votes
2
replies
257
views
1
vote
5
replies
1.2k
views
updated 6 weeks ago by
zhbyrd
•
0
•
written 9 months ago by
Mr. George
▴
10
1
vote
2
replies
296
views
3
votes
5
replies
442
views
updated 3 days ago by
LauferVA
4.6k
•
written 4 days ago by
bioinfo1990
▴
10
2
votes
3
replies
378
views
Recent Votes
Recent Locations •
All
Taiwan, 3 minutes ago
Netherlands, 14 minutes ago
Italy, 16 minutes ago
United States, 21 minutes ago
Russian Federation, 25 minutes ago
Iran, 26 minutes ago
Finland, 28 minutes ago
Recent Awards •
All
Popular Question to
Mohita
▴
50
Popular Question to
Yongjie Zhang
▴
110
Popular Question to
Sony
▴
20
Popular Question to
priyankap079
•
0
Popular Question to
SHXVRR
▴
20
Popular Question to
shelkmike
★
1.5k
Popular Question to
namck
•
0
Recent Replies
Answer: Defining residues as buried or exposed based in ASAs/RSAs
by
Dan A
•
0
I was also interested in this topic recently. What I've tried to do is to fit a 2 component Gaussian mixture model to an array of SASA valu…
Answer: Understanding Re-use of Query Sequences in Long Read Alignments
by
LauferVA
4.6k
@charles , You're right to wonder - even a very thoughtful approach, like yours, will generate some confusion. I'll indicate some "clues" …
Comment: Associating VDJ clonotyping data with scRNA-seq in Seurat
by
garcesj
▴
50
It's a great workaround. My only question is about just removing the duplicates (`tcr <- tcr[!duplicated(tcr$barcode), ]`). Aren't we losin…
Comment: Discrepancy between BAM and vcf
by
Istvan Albert
102k
I will also say that if you take any variant caller and then look at the corresponding BAM file, you'll find many minor inconsistencies - i…
Comment: Lift over of GWAS summary stat file from Hg38 to Hg19
by
Mllepnos
•
0
Thanks a lot for the recommendation to use bcftools +munge and +liftover instead of UCSC liftOver — I’ll definitely try that!
Comment: Discrepancy between BAM and vcf
by
GenoMax
150k
You could write to Illumina tech support and ask for resources that explain the default parameters for SNP calling/filtering in DRAGEN pipe…
Comment: Error gmx_mmpbsa: LP pseudo-atom is not supported
by
namck
•
0
Hi @bhavya2269, did you find any solution to this? I'm getting a similar error.
Comment: Question about `vg giraffe`
by
GenoMax
150k
You recent posts appear to be unrelated to the original question. If that is correct please post new questions in new threads. Posting unre…
Comment: Seeking Guidance on Selecting Control ChIP Sequences for nf-core/chipseq Pipelin
by
mark.ziemann
★
2.0k
These are not really technical replicates if they simply re-sequenced the same library three times. Resequencing multiplexed libraries on d…
Answer: Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
by
wessel.willemsen
•
0
I had the same problem as you but i solved it by allowing the reads to map to more targets. By default mapper.pl does not allow a read to m…
Comment: How to introduce normalized and scaled seurat data into monocle 3?
by
Bastien Hervé
6.2k
For OP's question, my guess is that they got NA's because `ScaleData` is only called on the `VariableFeatures` found the step before.
Try …
Answer: How to align library of highly similar sequences
by
ATpoint
87k
You need to deviate from the defaults of the aligner to enforce that only perfect matches are counted. Basically, and I use bowtie2 for pur…
Answer: Question about `vg giraffe`
by
Jouni Sirén
▴
610
The easiest way is to align the reads to the graph in GAM or GAF format. Then you select sample `sample` as the reference using `vg gbwt`:
…
Answer: How to introduce normalized and scaled seurat data into monocle 3?
by
Reza
•
0
I have a same question it seems that when we use the preprocess_cds() function, it does not save the normalized data directly in a separate…
Answer: How to align library of highly similar sequences
by
LauferVA
4.6k
Hey Rusty,
Ah, the old MPRA barcode to promoter mapping problem, eh? We got you.
**First let's frame the problem for educational purposes…
Traffic: 1244 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6