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120,963 results • Page
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News:
Structural bioinformatics workshop
Structural
bioinformatics
updated 11 minutes ago by
GenoMax
150k • written 40 minutes ago by
reetesh
• 0
1
vote
7
replies
128
views
How to test the similarity of two gene expression profiles
test
gene
sets
updated 10 minutes ago by
GenoMax
150k • written 19 hours ago by
htchd7ji
• 0
3
votes
3
replies
64
views
Which are the different kinds of GeneID that exist?
R
RNA-Seq
2 hours ago by
pinheirofabiano
▴ 100
0
votes
0
replies
27
views
Error using DWLS
deconvolution
DWLS
RNAseq
4 hours ago by
Ana
• 0
836
votes
169
replies
173k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 6 months ago by
Biostar
3.4k • written 8.4 years ago by
Istvan Albert
102k
0
votes
0
replies
35
views
WGCNA
problem
updated 4 hours ago by
Pierre Lindenbaum
166k • written 4 hours ago by
香
• 0
0
votes
5
replies
1.6k
views
How to remove this module selection error?
WGCNA
updated 4 hours ago by
香
• 0 • written 2.3 years ago by
gupta00aritra
• 0
0
votes
1
reply
110
views
bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider as unmapped reads, reads mapped on both human/mouse references.
bbsplit
nextflow
updated 3 hours ago by
GenoMax
150k • written 5 hours ago by
ZheFrench
▴ 590
1
vote
2
replies
79
views
Limma for DEG aalysis
R
DEG
limma
ANALYSIS
4 hours ago by
rahma.khoualdia
• 0
0
votes
0
replies
59
views
deletion impact
vcf
updated 5 hours ago by
GenoMax
150k • written 6 hours ago by
HarperReed
• 0
0
votes
1
reply
63
views
Help finding GTEx v8 file
GTEx
SHAPEIT2
updated 5 hours ago by
GenoMax
150k • written 7 hours ago by
蒲蒲
• 0
2
votes
5
replies
134
views
Idat file processing issue with command line cli
CanineHTS
IDAT
2 hours ago by
1769mkc
★ 1.2k
0
votes
0
replies
47
views
What is the best way to know if a pair of genes is random?
terms
genes
go
9 hours ago by
Ana
• 0
0
votes
0
replies
45
views
is there a way to get --ref paths to prioritize my order with vg call?
call
vgcall
10 hours ago by
PolenP
• 0
0
votes
1
reply
98
views
Has anyone tried used simple ML models to identify virulence genes?
genetics
R
classifier
genomics
machinelearning
updated 13 hours ago by
Mensur Dlakic
★ 29k • written 18 hours ago by
Jack
• 0
0
votes
2
replies
111
views
What does vg autoindex mpmap do?
vg
mpmap
autoindex
2 hours ago by
Ziyue
• 0
3
votes
3
replies
171
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax
alphafold
3
20 hours ago by
Picasa
▴ 660
0
votes
0
replies
63
views
filtering genes before or after the correlation?
co-expression
feature
selection
correlation
21 hours ago by
tyasird
▴ 10
0
votes
16
replies
517
views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram
XA
compress
updated 3 hours ago by
JustinZhang
▴ 130 • written 2 days ago by
Maarten
• 0
2
votes
4
replies
167
views
Which additional files are needed for the -taxids option in blast?
decontamination
taxids
blastn
updated 22 hours ago by
GenoMax
150k • written 1 day ago by
WaspInSpace
• 0
0
votes
0
replies
76
views
Job:
Assistant, Associate, or Full Project Scientist in Neurobiology
Biology
Neuroscience
Neurobiology
1 day ago by
UCSDBioSci
▴ 30
6
votes
8
replies
296
views
6 follow
Forum:
i dont know if its related to here or not but it can be very interesting discussion.
biotechnology
pills
pharma
biology
offtopic
updated 23 hours ago by
Dunois
★ 2.9k • written 1 day ago by
suleyman
• 0
1
vote
2
replies
142
views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection
microarray
preprocessing
1 day ago by
Sib
▴ 60
0
votes
0
replies
96
views
News:
Online Course: Machine learning for multi-omics integration (9–11 June)
Machine-Learning
Mult-Omics
1 day ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
144
views
Single Nuclei RNA-Sequencing Analysis Without CellRanger
CellRanger
single-cell
snRNA-seq
1 hour ago by
16_masques.vole
• 0
0
votes
0
replies
104
views
Demultiplexing samples when barcodes repeat: Any advice?
seurat
demultiplex
singlecell
scRNAseq
1 day ago by
tia
• 0
1
vote
1
reply
201
views
Unable to generate hierarchical and circle plot using CellChat
cellchat
scRNAseq
Seurat
1 day ago by
S
• 0
0
votes
8
replies
431
views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv
primer
blast
4 hours ago by
Rozita
▴ 40
0
votes
3
replies
198
views
convert Gene ID to Gene Symbol
gene-id
updated 1 day ago by
Ram
45k • written 2 days ago by
majorprogeria
• 0
0
votes
2
replies
173
views
Steps for meta-analysis
Meta-Analysis
differential-expression
updated 1 day ago by
Ram
45k • written 2 days ago by
majorprogeria
• 0
5
votes
1
reply
194
views
News:
The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
IGB
Integrated-Genome-Browser
Funding
updated 2 days ago by
microfuge
★ 2.0k • written 2 days ago by
Nowlan Freese
▴ 900
0
votes
0
replies
113
views
how pd tag were defined in gaf file
vg
2 days ago by
chuanj8848
• 0
4
votes
2
replies
200
views
SRA Toolkit - three fastq files - which is which?
scrna
sratoolkit
updated 1 day ago by
GenoMax
150k • written 2 days ago by
Neat
• 0
0
votes
0
replies
98
views
Using DEXseq on kallisto tsv outputs ?
alignement
DEXseq
kallisto
2 days ago by
Gerard
▴ 10
1
vote
0
replies
128
views
Herald:
The Biostar Herald for Wednesday, April 09, 2025
herald
2 days ago by
Biostar
3.4k
1
vote
2
replies
170
views
Batch effect
RNAseq
Batch-Effect
updated 2 days ago by
Ram
45k • written 2 days ago by
Fatemeh
▴ 40
6
votes
6
replies
389
views
Methods for directional pathway analysis of DEGs?
Pathway-analysis
ORA
GSEA
Limma
updated 1 day ago by
Gordon Smyth
★ 7.9k • written 4 days ago by
Steven
▴ 10
0
votes
0
replies
110
views
GTDB-tk classify_wf
GTDB-tk
classification
taxonomic
2 days ago by
pranjalarun10
• 0
0
votes
1
reply
475
views
Help finding proteases that most likely cleaved a peptide from a full-length protein
R
peptides
proteasix
updated 2 days ago by
Fatemeh
▴ 40 • written 18 months ago by
georgiamorgannn
• 0
0
votes
0
replies
104
views
protease candidates for my protein of interest
cleaving-site
proteases
protein
2 days ago by
Fatemeh
▴ 40
0
votes
1
reply
910
views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop
f3test
admixtools
updated 2 days ago by
Duy
• 0 • written 2.8 years ago by
francesco.fontani2
• 0
0
votes
2
replies
231
views
Annotate GFA with coverage depth
vg
2 days ago by
elcortegano
▴ 210
3
votes
4
replies
790
views
Query coverage high, E-value low, and identity low - Blastp results interpretation and article recommended?
sequence-analysis
blastp
protein
updated 1 day ago by
Mensur Dlakic
★ 29k • written 2 days ago by
Luana JBC
• 0
0
votes
0
replies
119
views
Need Help Regarding Back-Splicing Junction Coordinates in CIRI2 Output
circRNA
CIRI2
updated 2 days ago by
GenoMax
150k • written 2 days ago by
Faraz
• 0
1
vote
1
reply
175
views
Short reads to identify stuctural variants
SV
long-read
short-read
updated 2 days ago by
Istvan Albert
102k • written 3 days ago by
priya.bmg
▴ 70
0
votes
0
replies
281
views
Best approach for SNP calling in tumor single-cell multiome data (scRNA-seq + scATAC-seq) for CNV analysis
variant
SNP
single-cell
2 days ago by
nilaylale88
• 0
0
votes
0
replies
164
views
News:
News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop
Genome-Assembly
UConn
updated 3 days ago by
Ram
45k • written 3 days ago by
zsc25001
• 0
0
votes
3
replies
245
views
C.reinhardtii single-cell Seurat object - gene names instead of loci
loci
Chlamydomonas
single-cell
updated 3 days ago by
GenoMax
150k • written 3 days ago by
Ana
• 0
0
votes
3
replies
216
views
Snakemake Global Environment Container
Snakemake
Conda
Singularity
updated 2 days ago by
DBScan
▴ 470 • written 3 days ago by
meetmet
• 0
0
votes
2
replies
220
views
GTF repeatmasker annotation file
repeatmasker
GTF
updated 1 day ago by
rfran010
★ 1.4k • written 3 days ago by
frarodmar17
• 0
120,963 results • Page
1 of 2420
Recent Votes
Comment: How to test the similarity of two gene expression profiles
Answer: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
Answer: SRA Toolkit - three fastq files - which is which?
Answer: SRA Toolkit - three fastq files - which is which?
Answer: Which are the different kinds of GeneID that exist?
Comment: Which are the different kinds of GeneID that exist?
Answer: Which are the different kinds of GeneID that exist?
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Recent Replies
Comment: How to test the similarity of two gene expression profiles
by
GenoMax
150k
There may be a R package that does this but keep in mind that in order to do this comparison you would need to download the raw data from s…
Comment: Structural bioinformatics workshop
by
GenoMax
150k
Please do not post identical information in multiple threads.
Comment: How to test the similarity of two gene expression profiles
by
htchd7ji
• 0
I want to compare all the genes, not a small subset.
Comment: How to test the similarity of two gene expression profiles
by
htchd7ji
• 0
Yes. I want to see if there's a statistical test for this
Comment: How to test the similarity of two gene expression profiles
by
htchd7ji
• 0
Thanks for your reply. Is there any R package for this type of analysis or searching?
Comment: Single Nuclei RNA-Sequencing Analysis Without CellRanger
by
16_masques.vole
• 0
Thanks. I am using HiSAT2 as my aligner but I will checkout STARsolo
Comment: How to test the similarity of two gene expression profiles
by
GenoMax
150k
Qiagen is able to show this type of analysis (inside Ingenuity Pathway Analysis, IPA) where they can compare your list of genes to thousand…
Answer: How to test the similarity of two gene expression profiles
by
JustinZhang
▴ 130
Sir, your question is kinda vague. Let's say if you know the species of this sample and it happens to be human, then I think you should fin…
Comment: Question about assigning gene names, tximport and DESeq2
by
bioinfo
▴ 150
When i create the t2g file to assign the gene names I do this because I use ensembl version 112: mart <- biomaRt::useMart("ensembl", h…
Comment: What does vg autoindex mpmap do?
by
Ziyue
• 0
Thanks for your instruction. I got singal 9 twice. It could be that someone is using memory intensive tasks during my GCSA build. I am usi…
Comment: Which are the different kinds of GeneID that exist?
by
GenoMax
150k
You can lookup many ID's by putting them in a file (one per line) and using `epost` method like so. $ more names.txt 645520 7…
Comment: Which are the different kinds of GeneID that exist?
by
pinheirofabiano
▴ 100
thank you very much, @genomax I believe you're right, I'm working with human samples.. I need to convert them to gene symbols..
Answer: Which are the different kinds of GeneID that exist?
by
GenoMax
150k
Likely those are NCBI/Entrez ID's (which are numerical). You can look them up using [**EntrezDirect**][1]: $ esearch -db gene -query …
Comment: Idat file processing issue with command line cli
by
1769mkc
★ 1.2k
yes i can share a pair of the idat files, I have sent to the email address
Comment: bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider
by
GenoMax
150k
> From the code of bbsplit : https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh This is NOT the official repository of BBToo…
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