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Comment: RepBase30.02.fasta.tar.gz
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No. The first item on their download page says very clearly:
> You agree NOT to make the Repbase (or any part thereof, including Repbase R…
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I was just troubleshooting this error. It happens when you (most likely) tried to use averages for each cell type instead of replicates. Yo…
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Emy - Im glad you asked this because you have to get this right for the results to be valid. Below is a breakdown of what the flags mean, a…
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One tends to use **absolute expression metrics** for quality control and to guarantee statistical power - i.e., to ensure that only genes w…
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if you are forced to use gVCF, this will be problematic.
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https://www.cog-genomics.org/plink/2.0/formats#psam
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SOLUTION, ironically, from Grok:
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I wrote https://jvarkit.readthedocs.io/en/latest/KgToGff/
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Thanks for looking into that!
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Okay, it's not throwing it away, it's making the supplementary alignment 106 bases away, instead of counting it as a single alignment with …
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yes I'm looking for this canFam2 only that for some specific cases I have to use, even though I have the newer version also
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STRING works with derived data, which means they don't do any analyses on their own. You may get some information by clicking on links with…
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I don't think you will find a single person on this forum who will advocate for absolute expression analysis. In fact, almost the same ques…
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This pretty much covers all the common reasons. I will add an anecdote to further illustrate the difficulty. Not too long ago I was trainin…
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