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Recent Replies
Comment: Question about assigning gene names, tximport and DESeq2
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When i create the t2g file to assign the gene names I do this because I use ensembl version 112:
mart <- biomaRt::useMart("ensembl", h…
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Thanks for your instruction.
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You can lookup many ID's by putting them in a file (one per line) and using `epost` method like so.
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Comment: Which are the different kinds of GeneID that exist?
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thank you very much, @genomax I believe you're right, I'm working with human samples.. I need to convert them to gene symbols..
Answer: Which are the different kinds of GeneID that exist?
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Likely those are NCBI/Entrez ID's (which are numerical). You can look them up using [**EntrezDirect**][1]:
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yes i can share a pair of the idat files, I have sent to the email address
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> From the code of bbsplit : https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh
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If you have to compromise, keeping only the 1st hit in every XA tag is also practicable.
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I see, it's extremely long and nested, no wonder the file size explodes.
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Can you email a pair of IDAT files causing this issue to the author of [BCFtools/idat2gtc](http://github.com/freeseek/gtc2vcf) so that the …
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That makes sense, thank you.
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I face the same problem, can you help me
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Thank you so much for your response ! i'm gonna check the structure of my data again and see the limma documentation
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Looks like you may need to make an account on ANVIL (broad's online platform), where the file is supposed to be available --> https://git…
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