0
votes
1
reply
80
views
0
votes
3
replies
207
views
updated 4 hours ago by
Mensur Dlakic
★
29k
•
written 20 hours ago by
Sib
▴
60
0
votes
0
replies
42
views
0
votes
3
replies
182
views
updated 3 hours ago by
Mensur Dlakic
★
29k
•
written 20 hours ago by
Novoo
•
0
0
votes
1
reply
166
views
updated 19 hours ago by
Michael
55k
•
written 2 days ago by
Chatchapon
•
0
836
votes
167
replies
173k
views
111 follow
updated 7 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
1
vote
4
replies
179
views
updated 3 hours ago by
Mensur Dlakic
★
29k
•
written 23 hours ago by
vladimir_vinarsky
•
0
0
votes
2
replies
126
views
0
votes
4
replies
271
views
2
votes
2
replies
1.2k
views
updated 1 day ago by
Gordon Smyth
★
7.9k
•
written 3.2 years ago by
Assa Yeroslaviz
★
1.9k
0
votes
0
replies
111
views
2 days ago by
gagi1993
•
0
0
votes
1
reply
174
views
1
vote
2
replies
698
views
1
vote
1
reply
223
views
updated 2 days ago by
Zhenyu Zhang
★
1.3k
•
written 3 days ago by
Matt
•
0
1
vote
3
replies
273
views
0
votes
0
replies
229
views
0
votes
1
reply
167
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
pinheirofabiano
▴
110
0
votes
0
replies
733
views
1
vote
3
replies
253
views
1
vote
1
reply
189
views
0
votes
5
replies
280
views
3
votes
2
replies
227
views
0
votes
0
replies
165
views
0
votes
1
reply
259
views
updated 3 days ago by
Istvan Albert
102k
•
written 4 days ago by
Eltercertopico
•
0
1
vote
4
replies
436
views
3 days ago by
Fatemeh
▴
40
1
vote
3
replies
304
views
1
vote
2
replies
257
views
0
votes
1
reply
237
views
7
votes
4
replies
435
views
6 follow
1
vote
9
replies
630
views
0
votes
0
replies
168
views
0
votes
3
replies
291
views
1
vote
3
replies
313
views
1
vote
4
replies
355
views
3
votes
2
replies
345
views
0
votes
0
replies
207
views
0
votes
1
reply
244
views
0
votes
2
replies
315
views
1
vote
1
reply
412
views
updated 5 days ago by
Gordon Smyth
★
7.9k
•
written 10 days ago by
Gerard
▴
20
0
votes
0
replies
258
views
updated 5 days ago by
GenoMax
150k
•
written 5 days ago by
Shicheng Guo
★
9.6k
1
vote
2
replies
608
views
4
votes
10
replies
954
views
6 follow
updated 5 days ago by
cmdcolin
★
4.2k
•
written 15 days ago by
jahnreinhard.ringger
•
0
0
votes
0
replies
236
views
2
votes
3
replies
747
views
updated 5 days ago by
Hao
▴
10
•
written 2.6 years ago by
shangguandong1996
▴
30
1
vote
2
replies
500
views
2
votes
9
replies
714
views
updated 4 days ago by
Istvan Albert
102k
•
written 8 days ago by
megancgrdnr
•
0
3
votes
0
replies
256
views
1
vote
2
replies
412
views
1
vote
1
reply
364
views
1
vote
0
replies
226
views
Recent Votes
Recent Locations •
All
India, just now
Machhagan, 5 minutes ago
Finland, 9 minutes ago
Germany, 10 minutes ago
Bangladesh, 17 minutes ago
United States, 23 minutes ago
Norway stands with Ukraine, 30 minutes ago
Recent Awards •
All
Popular Question to
Pegasus
▴
130
Popular Question to
ParastooA
▴
20
Popular Question to
Pratik
★
1.1k
Teacher to
Maximilian Haeussler
★
1.7k
Popular Question to
kuttibiotech2009
▴
30
Popular Question to
analyst
▴
60
Popular Question to
kb_93
▴
10
Recent Replies
Answer: miRNA alignment and count generation
by
Jasim
•
0
I am also in the same boat bro, i got 000 countfeauture after aligned. After truobleshooting I found that sam file was failed. My sample wa…
Comment: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
Mensur Dlakic
★
29k
My recommendation is to take a couple of days and research what is already available. Is it more productive to spend a week and test severa…
Comment: Running out of disc space with wsl2
by
Mensur Dlakic
★
29k
I think there is a certain requirement for temporary disk space during prefetch, and you are likely blowing through it by running this in p…
Answer: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Mensur Dlakic
★
29k
> However, since ML algorithms like KNN, SVM, and NN are sensitive to feature scale and for PCA-based feature extraction, standardization i…
Comment: Why don't I see people calculating FPKM from normalized read counts?
by
dsull
★
7.3k
Bo Li and Colin Dewey (the developers of RSEM) introduced TPM in 2009 even before the cufflinks paper introduced FPKM. https://academic.oup…
Comment: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
Novoo
•
0
Thanks so much for the thoughtful feedback—I really appreciate you laying out the practical challenges. Here’s how I’m addressing each of y…
Comment: Running out of disc space with wsl2
by
vladimir_vinarsky
•
0
Thank you,
I have 32GB rRAM, 16 Cores, Threads 32, and some 120GB on the C:\ drive (which is the SSD).
I think the download and processi…
Comment: Filtering vcf file for variants - including non-selected variants
by
andrebolerbarros
•
0
Hey @yokofakun! Thanks for your answer.
Unfortunately, this does not seem to work as well...
I had to use the variant list with `-T` cri…
Answer: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
GenoMax
150k
> student working on a lightweight lab data management & analytics tool aimed at small academic and startup labs
Commendable aim. Wishing …
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
That question was about the need or lack of need to perform log transformation. This question is about the need or lack of need to standard…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
GenoMax
150k
Prior thread for reference : https://www.biostars.org/p/9611266/
Answer: Any recommendation for calculating Fu and Li's D using RStudio?
by
Michael
55k
I have recently experienced the same, also PopGenome was thrown out of CRAN a while ago. You might get it to work in combination with an ol…
Comment: Running out of disc space with wsl2
by
GenoMax
150k
How many cores, how much RAM and disk space do you have on this computer? WSL2 allocates a TB of disk space so as long as you have the reso…
Comment: Running out of disc space with wsl2
by
Arup Ghosh
3.3k
It depends on how much data you are trying to download and the storage space left on your PC's `C:\` drive, as it's the default location fo…
Comment: Filtering vcf file for variants - including non-selected variants
by
Pierre Lindenbaum
166k
may be you want `bcftools isec`
Traffic: 1669 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6