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Hi,
I am facing the same problem and was wondering if you found a solution?
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GSEA is directional and will identify gene sets that are regulated in one direction. If you want to use ORA, you could separate up-regulate…
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> Should I merge these replicates? If yes, should the merging be done at
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Yes, that is correct.
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Just a thought. You could make fake illumina reads from HiFi reads.
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Please learn [how to ask a good question](https://www.biostars.org/p/75548/). We are unable to help you given the information provided.
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