Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
120,708 results • Page
1 of 2415
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
9
views
Gene Expression Timeline Analysis for N=1
Analysis
Gene
Expression
16 minutes ago by
ATRX
★ 1.2k
0
votes
0
replies
11
views
Tool:
PAN-GO Functionome: known functions of all human protein-coding genes
goenrichment
function
GO
goterms
geneontology
41 minutes ago by
geneontologyhelp
▴ 440
0
votes
0
replies
30
views
Can I combine segment results from Sequenza and cnvkit?
CNV
sequenza
cnvkit
2 hours ago by
Ram
45k
0
votes
1
reply
131
views
How to clarify results from an HLA association analysis - Omnibus tests/HATK/other options
Omnibus
HLA
HATK
GWAS
Regression
updated 3 hours ago by
grover.sandeep
• 0 • written 1 day ago by
s.may-wilson
▴ 50
0
votes
0
replies
37
views
News:
Multi-Omics Integration with Machine Learning — Online Course!
Machine-Learning
Multi-Omics
Depp-Learning
Data-Integration
BigData
3 hours ago by
Physalia-courses
★ 2.6k
835
votes
169
replies
170k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 5 months ago by
Biostar
3.4k • written 8.3 years ago by
Istvan Albert
102k
1
vote
2
replies
87
views
Alignment algorithm for DNA sequencing
sequencing
data
DNA
updated 4 hours ago by
ATpoint
87k • written 5 hours ago by
QX
▴ 70
0
votes
1
reply
89
views
RepeatMasker UCSC track
RepeatMasker
updated 5 hours ago by
Michael
55k • written 9 hours ago by
frarodmar17
• 0
0
votes
0
replies
57
views
rarefaction curve metagenomic reads show species saturation around 100 000 reads
metagenomics
rarefaction
kraken2
8 hours ago by
rDNA
▴ 20
0
votes
4
replies
274
views
Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argument
cibersortx
updated 2 hours ago by
jared.andrews07
★ 18k • written 3 days ago by
Pumla
• 0
9
votes
21
replies
7.5k
views
12 follow
BLAST Database error: Database memory map file error
makeblastdb
updated 10 hours ago by
bagdevi.mishra
▴ 110 • written 6 months ago by
Martina
• 0
0
votes
2
replies
119
views
Looking up gene name from mRNA ID using biomaRt
R
mRNA
biomaRt
updated 4 hours ago by
Ram
45k • written 14 hours ago by
Khôi
• 0
0
votes
0
replies
79
views
Interpreting negative gap length in MUMMER4
mummer
translocation
19 hours ago by
cedric.blais
▴ 20
0
votes
0
replies
66
views
Uncertainty about deepTools computeMatrix options for RNA modifications
deepTools
metagene
computeMatrix
20 hours ago by
Kyle
• 0
0
votes
0
replies
67
views
News:
Live Online Course: Introduction to Python, April, 2025
python
programming
course
23 hours ago by
soledad.esteban
• 0
3
votes
6
replies
464
views
Multiple factors in DESeq2
deseq2
1 day ago by
noodlejackson
▴ 30
6
votes
2
replies
209
views
Why do RNAseq reads align to non-gene regions of the bacterial genome?
RNAseq
transcription
updated 1 day ago by
i.sudbery
21k • written 1 day ago by
Texx
▴ 40
1
vote
1
reply
160
views
Confused about discovering novel genes in a model organism using STAR, Trinity, and reference genomes
star
trinity
rnaseq
updated 1 day ago by
Ram
45k • written 1 day ago by
zizigolu
★ 4.3k
3
votes
7
replies
206
views
nanopore variant calling
pacBio
long-read
nanopore
updated 4 hours ago by
colindaven
7.3k • written 1 day ago by
Meghan.T
• 0
0
votes
3
replies
194
views
enrichGo problem
enrichGo
updated 3 hours ago by
Arup Ghosh
3.3k • written 1 day ago by
mimijane1664
• 0
1
vote
4
replies
197
views
Seeking Help for Reanalysis of Raw WES Data
WES
updated 23 hours ago by
Jeremy Leipzig
23k • written 1 day ago by
lidia.manczak
• 0
1
vote
8
replies
187
views
Biscuit Alignment and Index failed - WGBS - Bisulfite analysis
BWA
Biscuit
Bisulfite
updated 1 day ago by
Ram
45k • written 1 day ago by
Palanikumar.Palanichamy
• 0
0
votes
3
replies
165
views
illumina: Adapter Confusion
ILLUMINA
ADAPTER
updated 1 day ago by
GenoMax
149k • written 1 day ago by
lingjun meng
▴ 20
2
votes
3
replies
180
views
Identifying primer sequences from raw FASTQ files
primers
9 hours ago by
Chandini
• 0
2
votes
7
replies
1.3k
views
HTSlib threads when ingesting large bgzipped FASTA
htslib
samtools
bgzip
c
updated 1 day ago by
aw7
▴ 370 • written 20 months ago by
Oleksii
• 0
3
votes
3
replies
233
views
question for dowloading Protein fasta sequence by edirect using while
edirect
updated 1 day ago by
vkkodali_ncbi
★ 3.8k • written 2 days ago by
诗友
• 0
2
votes
2
replies
648
views
Validate RNAseq Models in Microarray Data?
microarray
rnaseq
coxlasso
fpkm
updated 1 day ago by
ATpoint
87k • written 2.7 years ago by
vitor
▴ 130
0
votes
0
replies
100
views
Restrict anlaysis of WGS VCF file to Refseq Select using snpeff
refseq
vcf
wgs
1 day ago by
Gabriel
• 0
0
votes
2
replies
184
views
Novel genes in model organisms
homologue
genome
gene
2 days ago by
zizigolu
★ 4.3k
0
votes
1
reply
182
views
Understanding sctransform
sctransform
Seurat
updated 2 days ago by
Bastien Hervé
6.1k • written 2 days ago by
Deepak Tanwar
★ 4.2k
1
vote
1
reply
203
views
Subset reads based on Phred-score ranges
phred
sequencing
ngs
updated 2 days ago by
GenoMax
149k • written 2 days ago by
Mark
▴ 30
5
votes
3
replies
247
views
Reasoning - Why is it invalid to compare ratios of TPMs?
RNAseq
analysis
expression
normalization
differential
TPM
batch
effect
updated 4 hours ago by
ATpoint
87k • written 2 days ago by
VTh
• 0
2
votes
2
replies
313
views
DEGs Analysis For a Microarray Data that has one biological replicates per cell line in each condition
Analysis
DEGs
Microarray
2 days ago by
mete.han.celebi
• 0
2
votes
6
replies
336
views
The soapdenovo2 genome assembly is highly fragmented - learning genome assembly with public data
Gene
soapdenovo2
assembly
updated 2 days ago by
lieven.sterck
15k • written 2 days ago by
JieQY
• 0
0
votes
2
replies
191
views
Cytoscape COLOUR EDGES
Reulatory
Cytoscape
Networks
1 day ago by
SKY
▴ 60
3
votes
3
replies
492
views
VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
Allele-Balance
FilterVcf
Picard
GATK
updated 2 days ago by
GokalpC
▴ 160 • written 15 days ago by
Eduardo
▴ 20
1
vote
4
replies
530
views
Haplotype analysis
founder
haplotype-analysis
1 day ago by
disha3786
• 0
3
votes
4
replies
330
views
Indica rice genome and annotation files
RNASeq
updated 2 days ago by
ChanderKant (CK) Chaudhary
▴ 10 • written 4 days ago by
chandimaa
• 0
2
votes
6
replies
381
views
Question: Making primers for cloning and transfection
transfection
cloning
primer
PCR
gene
updated 2 days ago by
jared.andrews07
★ 18k • written 2 days ago by
Lu Adr
• 0
0
votes
0
replies
149
views
Help with the interpretation of Silhouette width averaging
clustering
kmeans
cluster
silhouettemethod
2 days ago by
Maria Jose
• 0
0
votes
1
reply
217
views
Job:
Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
Cancer
Oncology
Tenure-earning
Faculty
Bioinformatics
updated 3 days ago by
GenoMax
149k • written 3 days ago by
maritza.garcia-saavedra
• 0
0
votes
1
reply
198
views
Job:
Open Rank Tenure-earning Faculty in the Department of Biostatistics & Bioinformatics
Oncology
Faculty
Leadership
updated 3 days ago by
GenoMax
149k • written 3 days ago by
maritza.garcia-saavedra
• 0
35
votes
14
replies
1.2k
views
12 follow
Forum:
How do you estimate time to complete a project or task?
career
ngs
written 6 weeks ago by
sviatoslav.kendall
▴ 960
0
votes
0
replies
286
views
Tutorial:
CC-By 4.0 Project (unpublished papers and data) release on OSF - Discoveries of 2nd/3rd order gene combinations for static/time series data in cell/…
MachineLearning
GeneCombination
CellSignaling
SensitivityAnalysis
13 hours ago by
sinha.shriprakash
▴ 20
1
vote
1
reply
194
views
Pre-Alignment process
read_depth_measure
updated 3 days ago by
GenoMax
149k • written 3 days ago by
AIMAR
• 0
0
votes
0
replies
158
views
Differential methylation analysis using Dorado
dorado
m6A
DRS
nanopore
3 days ago by
baibhu1234
▴ 20
0
votes
0
replies
153
views
Annotate Phylogentic Tree with classes
python
tree
phylogenetic
analysis
3 days ago by
BIANCA
• 0
1
vote
1
reply
201
views
Is it possible for genomic DNA to be sequenced in a modern RNA-seq protocol?
transcriptome
genome
RNA-seq
updated 3 days ago by
GenoMax
149k • written 3 days ago by
predeus
★ 2.1k
2
votes
3
replies
284
views
Picard gives empty value for HS_LIBRARY_SIZE when running CollectHsMetrics
sequencing
library
picard
2 days ago by
Bertalan_Takacs
▴ 120
1
vote
2
replies
239
views
single cell compositional analysis - how adjusting for covariates (age)
compositional-analysis
RNA-seq
single-cell
1 day ago by
Francesco
▴ 20
120,708 results • Page
1 of 2415
Recent Votes
Answer: Why do RNAseq reads align to non-gene regions of the bacterial genome?
Why do RNAseq reads align to non-gene regions of the bacterial genome?
Answer: Why do RNAseq reads align to non-gene regions of the bacterial genome?
Comment: Alignment algorithm for DNA sequencing
A: What is SizeFactors
what is the difference between GRCh37 and hg19 ?
Answer: Reasoning - Why is it invalid to compare ratios of TPMs?
Recent Locations •
All
United States,
5 minutes ago
United States,
7 minutes ago
United States,
8 minutes ago
United States,
12 minutes ago
Norway stands with Ukraine,
23 minutes ago
Singapore,
26 minutes ago
Frankrike,
27 minutes ago
Recent Awards •
All
Popular Question
to
jkim
▴ 190
Popular Question
to
Begonia_pavonina
▴ 210
Teacher
to
Mensur Dlakic
★ 29k
Popular Question
to
cmdcolin
★ 4.2k
Popular Question
to
from the mountains
▴ 250
Popular Question
to
pablo
▴ 330
Popular Question
to
Leite
★ 1.3k
Recent Replies
Comment: GERP Score for variants
by
Begonia_pavonina
▴ 210
It seems that the link http://mendel.stanford.edu/SidowLab/downloads/gerp/ is dead now. Would anyone know if it is temporary of definitive?…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
jared.andrews07
★ 18k
Well, the issue is what it says. You're saying your reference data is single cell, but there's only a single cell for each cell type. It ex…
Answer: How to clarify results from an HLA association analysis - Omnibus tests/HATK/oth
by
grover.sandeep
• 0
https://pubmed.ncbi.nlm.nih.gov/37495751/ You can reach me. Sandeep Grover
Comment: enrichGo problem
by
Arup Ghosh
3.3k
Can you share some of the gene names from the `genes` vector?
Comment: nanopore variant calling
by
colindaven
7.3k
You'll get massive coverage for just one gene (maybe 2000+ depending on how long you run the minion for), so you could consider multiple ge…
Comment: Reasoning - Why is it invalid to compare ratios of TPMs?
by
ATpoint
87k
I can only speak for myself, but I have never looked at gene ratios, nor do I see its usecase.
Comment: Alignment algorithm for DNA sequencing
by
ATpoint
87k
> some alignment of DNA sequencing This is not an adequate description of what you achieve to do. Please say why common tools, such as the…
Comment: Alignment algorithm for DNA sequencing
by
GenoMax
149k
You can use `bbmap` with the `local=t` option if you need local alignments. `bowtie v.1.x` does ungapped alignments.
Answer: RepeatMasker UCSC track
by
Michael
55k
> These sequences are located in different regions of the genome and they have different lengths. Err, you are talking about repeats here,…
Comment: Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair
by
GenoMax
149k
Only one tool from BBTools package is formally published: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0185056 BBTool…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
GenoMax
149k
Please avoid posting screenshots of text data. You can copy/paste and then format the text as `code` using `101010` button in the editor wi…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
Pumla
• 0
This is the error i have: ![enter image description here][1] and this is my data: ![enter image description here][2] [1]: /medi…
Comment: Reasoning - Why is it invalid to compare ratios of TPMs?
by
VTh
• 0
Thanks. I agree with your sentiment. This is off topic to the general question, but I still have a mental disconnect somewhere at the with…
Comment: Identifying primer sequences from raw FASTQ files
by
Chandini
• 0
Thank you Michael! Yes I think I should also try to go with looking for known primers in the fastq files; I tried to write a python script …
Comment: BLAST Database error: Database memory map file error
by
bagdevi.mishra
▴ 110
Hello All, I am getting the same error blast database error: database memory map file error Not during database creation but when I am ru…
Traffic: 2490 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6