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Recent Replies
Comment: Short reads to identify stuctural variants
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priya.bmg
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Thank you for this nice insight .Do you have any suggestions on methods to confirm if the identified structural variants in long reads are …
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thank you very much
I'm working on cds sequence of the gene of interest
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> but the link provided in the loeuf.pm file doesn't seem to work
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> How do I get this file ?
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see https://www.biostars.org/p/318576/ ;
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NovaSeq X uses XLEAP-SBS chemistry. While two color like NovaSeq 6000, it is different. Though the chemistry may be different the sequence …
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To complement the discussion here: `fastplong` ([**LINK**][1]) is a version of `fastp` meant for long reads such as ONT/PacBio.
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> Can I skip trimming my reads since I'm filtering them by taking those with the highest scores using fastp?
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What is DNA Assembly?
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Hi, my team is also upgrading from the NovaSeq 6000 to NovaSeq X. I was wondering if you did end up running into any sort of batch effects …
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Hello,
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Thanks to those who replied, the problem is solved and I'll just mention it in case anybody gets the same problem : Actually despite the "C…
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Thank you so much for the information! It's really helpful!
Answer: Does vg giraffe output secondary and supplimentary alignments?
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There is option `--max-multimaps INT`, which makes Giraffe output at most `INT` alignments for each read. We don't really test it, but it s…
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There should be GRCh38 paths in the pggb graph. You can check the paths in the graph by extracting P or W lines:
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