Post does not exist.
Limit : all time
all time today this week this month this year
120,964 results • Page 1 of 2420
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
9
views
Blastx issue
Long coding non blastx RNA
17 minutes ago by Avik • 0
0
votes
1
reply
19
views
News: Structural bioinformatics workshop
Structural bioinformatics
updated 1 hour ago by 150k • written 2 hours ago by • 0
1
vote
7
replies
150
views
How to test the similarity of two gene expression profiles
test gene sets
updated 1 hour ago by 150k • written 21 hours ago by • 0
3
votes
3
replies
75
views
Which are the different kinds of GeneID that exist?
R RNA-Seq
4 hours ago by pinheirofabiano ▴ 100
0
votes
0
replies
32
views
Error using DWLS
deconvolution DWLS RNAseq
5 hours ago by Ana • 0
836
votes
169
replies
173k
views
110 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 6 months ago by 3.4k • written 8.4 years ago by 102k
0
votes
0
replies
40
views
WGCNA
problem
updated 5 hours ago by 166k • written 5 hours ago by • 0
0
votes
5
replies
1.6k
views
How to remove this module selection error?
WGCNA
updated 5 hours ago by • 0 • written 2.3 years ago by • 0
0
votes
1
reply
127
views
bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider as unmapped reads, reads mapped on both human/mouse references.
bbsplit nextflow
updated 4 hours ago by 150k • written 6 hours ago by ▴ 590
1
vote
2
replies
83
views
Limma for DEG aalysis
R DEG limma ANALYSIS
6 hours ago by rahma.khoualdia • 0
0
votes
0
replies
62
views
deletion impact
vcf
updated 7 hours ago by 150k • written 8 hours ago by • 0
0
votes
1
reply
66
views
Help finding GTEx v8 file
GTEx SHAPEIT2
updated 6 hours ago by 150k • written 8 hours ago by • 0
2
votes
5
replies
142
views
Idat file processing issue with command line cli
CanineHTS IDAT
4 hours ago by 1769mkc ★ 1.2k
0
votes
0
replies
48
views
What is the best way to know if a pair of genes is random?
terms genes go
10 hours ago by Ana • 0
0
votes
0
replies
46
views
is there a way to get --ref paths to prioritize my order with vg call?
call vgcall
12 hours ago by PolenP • 0
0
votes
1
reply
100
views
Has anyone tried used simple ML models to identify virulence genes?
genetics R classifier genomics machinelearning
updated 14 hours ago by ★ 29k • written 19 hours ago by • 0
0
votes
2
replies
116
views
What does vg autoindex mpmap do?
vg mpmap autoindex
3 hours ago by Ziyue • 0
3
votes
3
replies
172
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax alphafold 3
21 hours ago by Picasa ▴ 660
0
votes
0
replies
64
views
filtering genes before or after the correlation?
co-expression feature selection correlation
22 hours ago by tyasird ▴ 10
0
votes
16
replies
523
views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram XA compress
updated 4 hours ago by ▴ 130 • written 2 days ago by • 0
2
votes
4
replies
168
views
Which additional files are needed for the -taxids option in blast?
decontamination taxids blastn
updated 1 day ago by 150k • written 1 day ago by • 0
0
votes
0
replies
77
views
Job: Assistant, Associate, or Full Project Scientist in Neurobiology
Biology Neuroscience Neurobiology
1 day ago by UCSDBioSci ▴ 30
6
votes
8
replies
297
views
6 follow
Forum: i dont know if its related to here or not but it can be very interesting discussion.
biotechnology pills pharma biology offtopic
updated 1 day ago by ★ 2.9k • written 1 day ago by • 0
1
vote
2
replies
143
views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection microarray preprocessing
1 day ago by Sib ▴ 60
0
votes
0
replies
97
views
News: Online Course: Machine learning for multi-omics integration (9–11 June)
Machine-Learning Mult-Omics
1 day ago by Physalia-courses ★ 2.6k
0
votes
2
replies
149
views
Single Nuclei RNA-Sequencing Analysis Without CellRanger
CellRanger single-cell snRNA-seq
2 hours ago by 16_masques.vole • 0
0
votes
0
replies
105
views
Demultiplexing samples when barcodes repeat: Any advice?
seurat demultiplex singlecell scRNAseq
1 day ago by tia • 0
1
vote
1
reply
203
views
Unable to generate hierarchical and circle plot using CellChat
cellchat scRNAseq Seurat
1 day ago by S • 0
0
votes
8
replies
436
views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv primer blast
5 hours ago by Rozita ▴ 40
0
votes
3
replies
199
views
convert Gene ID to Gene Symbol
gene-id
updated 1 day ago by 45k • written 2 days ago by • 0
0
votes
2
replies
174
views
Steps for meta-analysis
Meta-Analysis differential-expression
updated 1 day ago by 45k • written 2 days ago by • 0
5
votes
1
reply
195
views
News: The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
IGB Integrated-Genome-Browser Funding
updated 2 days ago by ★ 2.0k • written 2 days ago by ▴ 900
0
votes
0
replies
115
views
how pd tag were defined in gaf file
vg
2 days ago by chuanj8848 • 0
4
votes
2
replies
205
views
SRA Toolkit - three fastq files - which is which?
scrna sratoolkit
updated 2 days ago by 150k • written 2 days ago by • 0
0
votes
0
replies
99
views
Using DEXseq on kallisto tsv outputs ?
alignement DEXseq kallisto
2 days ago by Gerard ▴ 10
1
vote
0
replies
129
views
Herald: The Biostar Herald for Wednesday, April 09, 2025
herald
2 days ago by Biostar 3.4k
1
vote
2
replies
171
views
Batch effect
RNAseq Batch-Effect
updated 2 days ago by 45k • written 2 days ago by ▴ 40
6
votes
6
replies
391
views
Methods for directional pathway analysis of DEGs?
Pathway-analysis ORA GSEA Limma
updated 1 day ago by ★ 7.9k • written 4 days ago by ▴ 10
0
votes
0
replies
111
views
GTDB-tk classify_wf
GTDB-tk classification taxonomic
2 days ago by pranjalarun10 • 0
0
votes
1
reply
476
views
Help finding proteases that most likely cleaved a peptide from a full-length protein
R peptides proteasix
updated 2 days ago by ▴ 40 • written 18 months ago by • 0
0
votes
0
replies
105
views
protease candidates for my protein of interest
cleaving-site proteases protein
2 days ago by Fatemeh ▴ 40
0
votes
1
reply
911
views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop f3test admixtools
updated 2 days ago by • 0 • written 2.8 years ago by • 0
0
votes
2
replies
232
views
Annotate GFA with coverage depth
vg
2 days ago by elcortegano ▴ 210
3
votes
4
replies
791
views
Query coverage high, E-value low, and identity low - Blastp results interpretation and article recommended?
sequence-analysis blastp protein
updated 1 day ago by ★ 29k • written 2 days ago by • 0
0
votes
0
replies
120
views
Need Help Regarding Back-Splicing Junction Coordinates in CIRI2 Output
circRNA CIRI2
updated 2 days ago by 150k • written 2 days ago by • 0
1
vote
1
reply
176
views
Short reads to identify stuctural variants
SV long-read short-read
updated 2 days ago by 102k • written 3 days ago by ▴ 70
0
votes
0
replies
282
views
Best approach for SNP calling in tumor single-cell multiome data (scRNA-seq + scATAC-seq) for CNV analysis
variant SNP single-cell
2 days ago by nilaylale88 • 0
0
votes
0
replies
165
views
News: News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop Genome-Assembly UConn
updated 3 days ago by 45k • written 3 days ago by • 0
0
votes
3
replies
247
views
C.reinhardtii single-cell Seurat object - gene names instead of loci
loci Chlamydomonas single-cell
updated 3 days ago by 150k • written 3 days ago by • 0
0
votes
3
replies
217
views
Snakemake Global Environment Container
Snakemake Conda Singularity
updated 2 days ago by ▴ 470 • written 3 days ago by • 0
120,964 results • Page 1 of 2420
Recent Votes
Answer: Which covariates and factors to include in model matrix
Answer: Which covariates and factors to include in model matrix
Comment: How to test the similarity of two gene expression profiles
Answer: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
Answer: SRA Toolkit - three fastq files - which is which?
Answer: SRA Toolkit - three fastq files - which is which?
Answer: Which are the different kinds of GeneID that exist?
Recent Locations • All
United States, just now
United States, 10 minutes ago
United States, 10 minutes ago
United States, 14 minutes ago
India, 16 minutes ago
United States, 25 minutes ago
Russian Federation, 41 minutes ago
Recent Awards • All
Popular Question to rajdeepboral00 ▴ 60
Popular Question to htchd • 0
Popular Question to samuel.himes • 0
Scholar to GenoMax 150k
Teacher to Istvan Albert 102k
Popular Question to alwayshope ▴ 40
Popular Question to aboozar.soorni ▴ 30
Recent Replies
Comment: Convert bed12 to GFF by cmdcolin ★ 4.2k
nice work on bed2gff...managed to use it! potentially might make some feature requests but otherwise works well
Comment: How to test the similarity of two gene expression profiles by GenoMax 150k
There may be a R package that does this but keep in mind that in order to do this comparison you would need to download the raw data from s…
Comment: Structural bioinformatics workshop by GenoMax 150k
Please do not post identical information in multiple threads.
Comment: How to test the similarity of two gene expression profiles by htchd • 0
I want to compare all the genes, not a small subset.
Comment: How to test the similarity of two gene expression profiles by htchd • 0
Yes. I want to see if there's a statistical test for this
Comment: How to test the similarity of two gene expression profiles by htchd • 0
Thanks for your reply. Is there any R package for this type of analysis or searching?
Comment: Single Nuclei RNA-Sequencing Analysis Without CellRanger by 16_masques.vole • 0
Thanks. I am using HiSAT2 as my aligner but I will checkout STARsolo
Comment: How to test the similarity of two gene expression profiles by GenoMax 150k
Qiagen is able to show this type of analysis (inside Ingenuity Pathway Analysis, IPA) where they can compare your list of genes to thousand…
Answer: How to test the similarity of two gene expression profiles by JustinZhang ▴ 130
Sir, your question is kinda vague. Let's say if you know the species of this sample and it happens to be human, then I think you should fin…
Comment: Question about assigning gene names, tximport and DESeq2 by bioinfo ▴ 150
When i create the t2g file to assign the gene names I do this because I use ensembl version 112: mart <- biomaRt::useMart("ensembl", h…
Comment: What does vg autoindex mpmap do? by Ziyue • 0
Thanks for your instruction. I got singal 9 twice. It could be that someone is using memory intensive tasks during my GCSA build. I am usi…
Comment: Which are the different kinds of GeneID that exist? by GenoMax 150k
You can lookup many ID's by putting them in a file (one per line) and using `epost` method like so. $ more names.txt 645520 7…
Comment: Which are the different kinds of GeneID that exist? by pinheirofabiano ▴ 100
thank you very much, @genomax I believe you're right, I'm working with human samples.. I need to convert them to gene symbols..
Answer: Which are the different kinds of GeneID that exist? by GenoMax 150k
Likely those are NCBI/Entrez ID's (which are numerical). You can look them up using [**EntrezDirect**][1]: $ esearch -db gene -query …
Comment: Idat file processing issue with command line cli by 1769mkc ★ 1.2k
yes i can share a pair of the idat files, I have sent to the email address
Traffic: 1690 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6