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120,949 results • Page
1 of 2419
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Votes
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0
votes
0
replies
13
views
filtering genes before or after the correlation?
co-expression
feature
selection
correlation
40 minutes ago by
tyasird
▴ 10
1
vote
3
replies
78
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax
alphafold
3
updated 1 hour ago by
LauferVA
4.7k • written 4 hours ago by
Picasa
▴ 660
0
votes
11
replies
344
views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram
XA
compress
updated 1 hour ago by
GenoMax
150k • written 1 day ago by
Maarten
• 0
0
votes
2
replies
55
views
Which additional files are needed for the -taxids option in blast?
blastn
taxids
decontamination
updated 1 hour ago by
GenoMax
150k • written 3 hours ago by
WaspInSpace
• 0
836
votes
169
replies
172k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 6 months ago by
Biostar
3.4k • written 8.3 years ago by
Istvan Albert
102k
0
votes
0
replies
32
views
Job:
Assistant, Associate, or Full Project Scientist in Neurobiology
Biology
Neuroscience
Neurobiology
3 hours ago by
UCSDBioSci
▴ 30
4
votes
8
replies
203
views
6 follow
Forum:
i dont know if its related to here or not but it can be very interesting discussion.
biotechnology
pills
pharma
biology
offtopic
updated 2 hours ago by
Dunois
★ 2.9k • written 1 day ago by
suleyman
• 0
1
vote
2
replies
105
views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection
microarray
preprocessing
6 hours ago by
Sib
▴ 60
0
votes
0
replies
71
views
News:
Online Course: Machine learning for multi-omics integration (9–11 June)
Machine-Learning
Mult-Omics
14 hours ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
108
views
Single Nuclei RNA-Sequencing Analysis Without CellRanger
CellRanger
single-cell
snRNA-seq
updated 5 hours ago by
Ram
45k • written 23 hours ago by
16_masques.vole
• 0
0
votes
0
replies
76
views
Demultiplexing samples when barcodes repeat: Any advice?
seurat
demultiplex
singlecell
scRNAseq
23 hours ago by
tia
• 0
1
vote
1
reply
166
views
Unable to generate hierarchical and circle plot using CellChat
cellchat
scRNAseq
Seurat
1 day ago by
S
• 0
0
votes
7
replies
365
views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv
primer
blast
updated 1 day ago by
Istvan Albert
102k • written 3 days ago by
Rozita
▴ 40
0
votes
3
replies
165
views
convert Gene ID to Gene Symbol
gene-id
updated 6 hours ago by
Ram
45k • written 1 day ago by
majorprogeria
• 0
0
votes
2
replies
145
views
Steps for meta-analysis
Meta-Analysis
differential-expression
updated 6 hours ago by
Ram
45k • written 1 day ago by
majorprogeria
• 0
5
votes
1
reply
164
views
News:
The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
IGB
Integrated-Genome-Browser
Funding
updated 1 day ago by
microfuge
★ 2.0k • written 1 day ago by
Nowlan Freese
▴ 900
0
votes
0
replies
74
views
how pd tag were defined in gaf file
vg
1 day ago by
chuanj8848
• 0
2
votes
2
replies
148
views
SRA Toolkit - three fastq files - which is which?
scrna
sratoolkit
updated 1 day ago by
GenoMax
150k • written 1 day ago by
Neat
• 0
0
votes
0
replies
73
views
Using DEXseq on kallisto tsv outputs ?
alignement
DEXseq
kallisto
1 day ago by
Gerard
▴ 10
1
vote
0
replies
98
views
Herald:
The Biostar Herald for Wednesday, April 09, 2025
herald
1 day ago by
Biostar
3.4k
1
vote
2
replies
143
views
Batch effect
RNAseq
Batch-Effect
updated 1 day ago by
Ram
45k • written 1 day ago by
Fatemeh
▴ 40
6
votes
6
replies
349
views
Methods for directional pathway analysis of DEGs?
Pathway-analysis
ORA
GSEA
Limma
updated 21 hours ago by
Gordon Smyth
★ 7.9k • written 3 days ago by
Steven
▴ 10
0
votes
0
replies
83
views
GTDB-tk classify_wf
GTDB-tk
classification
taxonomic
1 day ago by
pranjalarun10
• 0
0
votes
1
reply
451
views
Help finding proteases that most likely cleaved a peptide from a full-length protein
R
peptides
proteasix
updated 1 day ago by
Fatemeh
▴ 40 • written 18 months ago by
georgiamorgannn
• 0
0
votes
0
replies
78
views
protease candidates for my protein of interest
cleaving-site
proteases
protein
1 day ago by
Fatemeh
▴ 40
0
votes
1
reply
887
views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop
f3test
admixtools
updated 1 day ago by
Duy
• 0 • written 2.8 years ago by
francesco.fontani2
• 0
0
votes
2
replies
200
views
Annotate GFA with coverage depth
vg
1 day ago by
elcortegano
▴ 210
3
votes
4
replies
615
views
Query coverage high, E-value low, and identity low - Blastp results interpretation and article recommended?
sequence-analysis
blastp
protein
updated 22 hours ago by
Mensur Dlakic
★ 29k • written 1 day ago by
Luana JBC
• 0
0
votes
0
replies
94
views
Need Help Regarding Back-Splicing Junction Coordinates in CIRI2 Output
circRNA
CIRI2
updated 1 day ago by
GenoMax
150k • written 1 day ago by
Faraz
• 0
1
vote
1
reply
148
views
Short reads to identify stuctural variants
SV
long-read
short-read
updated 1 day ago by
Istvan Albert
102k • written 2 days ago by
priya.bmg
▴ 70
0
votes
0
replies
239
views
Best approach for SNP calling in tumor single-cell multiome data (scRNA-seq + scATAC-seq) for CNV analysis
variant
SNP
single-cell
1 day ago by
nilaylale88
• 0
0
votes
0
replies
140
views
News:
News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop
Genome-Assembly
UConn
updated 2 days ago by
Ram
45k • written 2 days ago by
zsc25001
• 0
0
votes
3
replies
208
views
C.reinhardtii single-cell Seurat object - gene names instead of loci
loci
Chlamydomonas
single-cell
updated 2 days ago by
GenoMax
150k • written 2 days ago by
Ana
• 0
0
votes
3
replies
184
views
Snakemake Global Environment Container
Snakemake
Conda
Singularity
updated 1 day ago by
DBScan
▴ 470 • written 2 days ago by
meetmet
• 0
0
votes
2
replies
190
views
GTF repeatmasker annotation file
repeatmasker
GTF
updated 23 hours ago by
rfran010
★ 1.4k • written 2 days ago by
frarodmar17
• 0
0
votes
2
replies
1.3k
views
Searching for online tools to prepare mitochondrial codon usage
genome
updated 2 days ago by
aboozar.soorni
▴ 30 • written 4.6 years ago by
puipui
• 0
1
vote
1
reply
157
views
Getting sequences fragments using pysam
sequencing
pysam
reads
wgs
updated 2 days ago by
i.sudbery
21k • written 2 days ago by
Juls
• 0
6
votes
9
replies
3.0k
views
Does EnhancedVolcano() supports crosstalk()?
EnhancedVolcano
crosstalk
R
ggplot
updated 2 days ago by
GenoMax
150k • written 5.2 years ago by
IrK
▴ 100
0
votes
1
reply
150
views
How to select GEO datasets for differential expression analysis using GEO2R
GEO
DEGs
GEO2R
updated 2 days ago by
ATpoint
87k • written 2 days ago by
dreamer247
• 0
0
votes
0
replies
156
views
Blog:
Unlocking the Cellular Universe: The Importance of Single-Cell Sequencing in Animal and Plant Research
Single-cell
2 days ago by
Novogene
▴ 500
0
votes
4
replies
731
views
PopGenome lost individual information
PopGenome
updated 2 days ago by
Arup Ghosh
3.3k • written 12 months ago by
Yixuan
• 0
1
vote
1
reply
194
views
Question About Handling Technical Replicates in ATAC-seq
technical-replicate
atacseq
updated 2 days ago by
rfran010
★ 1.4k • written 2 days ago by
LuciaNhu
▴ 10
12
votes
16
replies
18k
views
8 follow
How to convert vcf to 23andme format
genome
sequencing
SNP
updated 2 days ago by
ngelbal
• 0 • written 7.5 years ago by
alec_djinn
▴ 390
0
votes
7
replies
363
views
Poor alignment rates using Bowtie
aligment
bowtie2
bowtie
miRNAs
updated 1 day ago by
Istvan Albert
102k • written 2 days ago by
omicon
▴ 40
1
vote
5
replies
261
views
Polishing raw nanopore reads with Pacbio
polishing
assembly
2 days ago by
samuel.a.odonnell
▴ 590
2
votes
4
replies
483
views
bbduk.sh trimming to BAM output file
bbduk.sh
updated 3 days ago by
Brian Bushnell
20k • written 9 days ago by
bge
• 0
0
votes
3
replies
275
views
Identifying domain of long-read assembled contig
longread
taxonomy
identification
contig
updated 3 days ago by
Mensur Dlakic
★ 29k • written 3 days ago by
Gio
• 0
0
votes
1
reply
196
views
Why does Radian run so much slower than vanilla R?
R
Python
Radian
VS-Code
updated 2 days ago by
Istvan Albert
102k • written 3 days ago by
RR
• 0
4
votes
9
replies
453
views
About the Tool FASTP
Quality-control
reads
fastp
updated 2 days ago by
shelkmike
★ 1.5k • written 3 days ago by
AIMAR
• 0
0
votes
0
replies
132
views
Significant SNPs with the same effect in FarmCPU
effect-size
gwas
FarmCPU
likage-disequilibrium
3 days ago by
AndrMod
• 0
120,949 results • Page
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Comment: Methods for directional pathway analysis of DEGs?
Comment: Methods for directional pathway analysis of DEGs?
The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
Answer: i dont know if its related to here or not but it can be very interesting discuss
Comment: How to Remove Sample Names from Heatmap
How to Remove Sample Names from Heatmap
Answer: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
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Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
by
shpak.max
▴ 60
I'm trying to match coordinates of methylation probes to the start-stop positions of genes, so alternative transcripts aren't really of int…
Comment: Which additional files are needed for the -taxids option in blast?
by
GenoMax
150k
Using the `taxids` option filters the BLAST search results, which come from entire database. That option does not pre-filter the BLAST data…
Answer: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
by
LauferVA
4.7k
@picasa - first, strictly speaking, @mensur is correct - there is no built-in, universal coordinate system shared by all structure files. S…
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
by
GenoMax
150k
> It is not about whether the data is online or not; it is about whether the XA tags will ever be needed or not OP said that the data has …
Comment: Which additional files are needed for the -taxids option in blast?
by
JustinZhang
▴ 120
See previous topic [here][1] [1]: https://www.biostars.org/p/200742/
Comment: i dont know if its related to here or not but it can be very interesting discuss
by
Dunois
★ 2.9k
> Personal agency should be considered a basic human right. It *is* a basic right, of not just humans, but all (at least) biological entit…
Comment: i dont know if its related to here or not but it can be very interesting discuss
by
Dunois
★ 2.9k
Your post is essentially off-topic. I don't think such uninformed and casual discussion of issues that are at best mildly related to bioin…
Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
by
Picasa
▴ 660
Thanks for your answer make sense. Not so related but do you know how to export the PAE plot by command line ? I usually open like this b…
Answer: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
by
Mensur Dlakic
★ 29k
> What is the best way to open all my .cif files with the same point of view? There is no way to do that, because there is no absolute c…
Comment: i dont know if its related to here or not but it can be very interesting discuss
by
Mensur Dlakic
★ 29k
Second that. Also, it has a title that contains zero information about the actual topic.
Answer: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
by
JustinZhang
▴ 120
My Answer: I think you should try at least. It's not a issue of reputation / cost, but a matter of statistics. Clue: 1. use awk / sed + s…
Comment: i dont know if its related to here or not but it can be very interesting discuss
by
Istvan Albert
102k
and we can see a bug in the system (see recommended posts in the right bar) looks like some spam can make it into the search index even tho…
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
by
Istvan Albert
102k
To expand on this you could perhaps store the multi mapped alignments separately, or just the XA tags separately in a much cheaper storage …
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
by
Istvan Albert
102k
I think it is important to frame the tradeoff correctly. It is not about whether the data is online or not; it is about whether the XA ta…
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
by
JustinZhang
▴ 120
Could you at least give two records in the CRAM file for example?
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