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Recent Replies
Comment: ONT Live-Basecalling Issue?
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GenoMax
150k
Did this block eliminate itself over time? It looks like ~4 M initial reads in your run are in "paused" state. Have not heard of this happe…
Answer: Is a log2 transformation an essential step in preparing expression data for mach
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Mensur Dlakic
★
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> Is a log2 transformation an essential step in preparing the expression data for machine learning, or can the normalized raw expression da…
Comment: How to re-annotate the structure of gene against a known genomic file
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Mensur Dlakic
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If you look above from this writing, this question was asked 5.9 years ago. If you click on user's name, you will see that they last visite…
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Sib
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I would greatly appreciate it if you could refer me to a tutorial on conducting feature selection for microarray data using some (or all) o…
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I don't understand why you think that you need some gene names to perform GO annotation. Just upload your proteins to PANNZER. It is an onl…
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Hey Kanoo,
How did this later turn out for you?
Comment: Is a log2 transformation an essential step in preparing expression data for mach
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You're shooting buzz words as in the question before. Please read the underlying literature and follow guided tutorials. There is no genera…
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Please show the functions to calculate this. Both transformations are simple division and multiplication operations with the column sums of…
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Sorry, is log2 taransformation also needed? Or we can apply ML methods on expression data without it?
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I don't have a better mathematical explanation, but FPKMs are not reliable for gene expression studies, there are many discussions about t…
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GCSA indexing certainly can be time consuming. On a reasonably well-behaved graph (such as those derived from VCFs, or usually those from t…
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There are too few valid genes in the input matrix expr_filtered, possibly because after the goodSamplesGenes filtering, only the grey modul…
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