updated 50 minutes ago by
Jordan M Eizenga
▴
690
•
written 12 hours ago by
elcortegano
▴
210
0
votes
1
reply
53
views
0
votes
1
reply
93
views
0
votes
0
replies
22
views
0
votes
2
replies
162
views
0
votes
0
replies
52
views
836
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
0
replies
114
views
0
votes
0
replies
68
views
0
votes
3
replies
128
views
0
votes
1
reply
73
views
0
votes
0
replies
75
views
15 hours ago by
frarodmar17
•
0
0
votes
2
replies
1.3k
views
updated 16 hours ago by
aboozar.soorni
▴
30
•
written 4.6 years ago by
puipui
•
0
1
vote
1
reply
92
views
6
votes
9
replies
2.9k
views
0
votes
1
reply
88
views
updated 16 hours ago by
ATpoint
87k
•
written 18 hours ago by
dreamer247
•
0
0
votes
0
replies
93
views
0
votes
4
replies
676
views
updated 14 hours ago by
Arup Ghosh
3.3k
•
written 12 months ago by
Yixuan
•
0
1
vote
1
reply
132
views
12
votes
16
replies
18k
views
8 follow
updated 1 day ago by
ngelbal
•
0
•
written 7.5 years ago by
alec_djinn
▴
390
0
votes
6
replies
237
views
1
vote
5
replies
201
views
7 hours ago by
samuel.a.odonnell
▴
590
2
votes
4
replies
417
views
updated 1 day ago by
Brian Bushnell
20k
•
written 7 days ago by
bge
•
0
0
votes
3
replies
208
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 1 day ago by
Gio
•
0
0
votes
5
replies
213
views
0
votes
1
reply
126
views
4
votes
9
replies
343
views
0
votes
0
replies
81
views
6
votes
11
replies
734
views
1 day ago by
alexandrakortsi
•
0
0
votes
0
replies
106
views
1 day ago by
alwayshope
▴
40
0
votes
1
reply
146
views
updated 1 day ago by
ATpoint
87k
•
written 1 day ago by
pinheirofabiano
▴
100
1
vote
1
reply
372
views
updated 1 day ago by
Alexander Blume
▴
10
•
written 7 months ago by
CTLong
▴
140
0
votes
0
replies
95
views
0
votes
0
replies
94
views
0
votes
0
replies
112
views
0
votes
1
reply
176
views
0
votes
7
replies
437
views
1 day ago by
himanshu0102
•
0
1
vote
2
replies
218
views
20 hours ago by
bioinfo1990
▴
10
0
votes
0
replies
124
views
updated 1 day ago by
Ram
45k
•
written 2 days ago by
Physalia-courses
★
2.6k
2
votes
2
replies
262
views
0
votes
1
reply
528
views
1
vote
1
reply
326
views
updated 4 days ago by
Gordon Smyth
★
7.9k
•
written 4 days ago by
Apprentice
▴
170
1
vote
1
reply
369
views
4
votes
6
replies
552
views
1
vote
2
replies
300
views
4
votes
7
replies
541
views
updated 14 hours ago by
Istvan Albert
102k
•
written 4 days ago by
jahnreinhard.ringger
•
0
4
votes
15
replies
727
views
updated 9 hours ago by
Phil Ewels
★
1.4k
•
written 4 days ago by
AIMAR
•
0
4
votes
3
replies
349
views
updated 1 day ago by
Yugan Gogul Muthukumar
▴
10
•
written 4 days ago by
jpeduprep
•
0
0
votes
0
replies
197
views
4 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
292
views
updated 1 day ago by
Ram
45k
•
written 4 days ago by
Assa Yeroslaviz
★
1.9k
8
votes
4
replies
523
views
Recent Votes
Recent Locations •
All
Australia, 4 minutes ago
United States, 16 minutes ago
Brazil, 26 minutes ago
Hong Kong, 35 minutes ago
USA, 46 minutes ago
China, 47 minutes ago
USA, Santa Cruz, CA, University of California Santa Cruz, 54 minutes ago
Recent Awards •
All
Popular Question to
kalavattam
▴
330
Popular Question to
bioinfo
▴
150
Popular Question to
ATRX
★
1.2k
Popular Question to
priya.bmg
▴
60
Popular Question to
elcortegano
▴
210
Popular Question to
zizigolu
★
4.3k
Recent Replies
Answer: Annotate GFA with coverage depth
by
Jordan M Eizenga
▴
690
You can annotate Bandage visualizations using a CSV with a certain structure, so you can process the `vg depth` TSV into Bandage's expected…
Answer: Query coverage high, E-value low, and identity low - Blastp results interpretati
by
Mensur Dlakic
★
29k
Either you are not clear what homologous sequences mean, or you are using some internal definition that makes sense to you. Let's pick an `…
Answer: Methods for directional pathway analysis of DEGs?
by
Gordon Smyth
★
7.9k
limma provides a suite of directional pathway analysis functions that are integrated with its DE procedures. They are based on competitive …
Comment: Discrepancy between positions on IGV and NCBI's PrimerBLAST
by
GenoMax
150k
> It showed me the same positions as that of PrimerBLAST.
So we know that result is correct.
You made the BED file manually? It is in cor…
Comment: MultiQC_report
by
Phil Ewels
★
1.4k
Thanks for spotting! As mentioned below, it's samples * top adapters. I've made an issue here: https://github.com/MultiQC/MultiQC/issues/31…
Comment: MultiQC_report
by
Phil Ewels
★
1.4k
This is exactly the case. Surprising that no-one else has brought this up in 10 years!
I've created an issue here to fix it: https://gith…
Comment: Poor alignment rates using Bowtie
by
GenoMax
150k
Quick representative check with a random Illumina dataset (50 bp, 200K reads from it).
Bowtie v.1.3.1 and `mature.fa` downloaded from miR…
Comment: Why does Radian run so much slower than vanilla R?
by
Istvan Albert
102k
I would recommend asking this on the radian GitHub discussion page.
Comment: Poor alignment rates using Bowtie
by
Istvan Albert
102k
That being said, I'd like to hear whether the Us in the reference made any difference. It is conceivable that Bowtie 1 treats U as a T.
L…
Comment: C.reinhardtii single-cell Seurat object - gene names instead of loci
by
GenoMax
150k
> BD Rhapsody protocols
That is important to know. Perhaps the issue is with the way you converted the GFF3 to GTF. What software did you …
Comment: C.reinhardtii single-cell Seurat object - gene names instead of loci
by
Ana
•
0
Thank you for your answer!
Unfortunalety, NCBI doesn't have the latest version of the genome and annotations for this organism (v6.1), so I…
Comment: Has anybody worked with C.reinhardtii single-cell before and could help me get t
by
GenoMax
150k
It is always safer to get sequence/annotations from standard sources like NCBI/Ensembl so no manipulations are required to make the data wo…
Comment: Poor alignment rates using Bowtie
by
GenoMax
150k
Looking at the size distribution the data must already be pre-trimmed so it does not make sense to trim again. You should merge data from t…
Answer: MultiQC_report
by
Basti
★
2.0k
I think it just counts the total number of lines while there could be multiple adapters types per sample (ex : illumina_universal_adapter, …
Traffic: 1699 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6