Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
121,036 results • Page
1 of 2421
Sort: Rank
Rank
Views
Votes
Replies
0
votes
4
replies
36
views
DRAGEN FILTER
calling
variant
dragen
filter
just now by
theresia.celine
• 0
0
votes
0
replies
40
views
Interpretation of the results: PCA
bioinformatics
PCA
1 hour ago by
Ariadna
▴ 20
2
votes
5
replies
84
views
How to check normal BAM_files before create a Panel Of Normals (PoN)
GATK
variant_calling
PoN
1 hour ago by
AIMAR
• 0
0
votes
0
replies
31
views
News:
Phylogenetic Comparative Methods in R (12–16 May, Online)
R
Phylogenetic-Comparative-Methods
3 hours ago by
Physalia-courses
★ 2.6k
836
votes
167
replies
174k
views
111 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 11 days ago by
Biostar
3.5k • written 8.4 years ago by
Istvan Albert
102k
0
votes
1
reply
111
views
how to handle infinite M-values in methylation array data
M-value
methylation
infinite
array
updated 7 hours ago by
Basti
★ 2.1k • written 19 hours ago by
matt192
• 0
1
vote
3
replies
1.6k
views
Free and redistributable genomic data sets?
data
software-development
genomics
updated 8 hours ago by
Meeru
• 0 • written 9.2 years ago by
woemler
▴ 170
1
vote
5
replies
976
views
Rna-seq data
data
rna-seq
updated 3 hours ago by
GenoMax
150k • written 3.1 years ago by
biology_inform
▴ 50
6
votes
3
replies
855
views
RNAseq example data
expression
RNA-Seq
data
next-gen
updated 11 hours ago by
ehaag
▴ 20 • written 4.6 years ago by
rakinitopo
▴ 10
0
votes
1
reply
220
views
Transcript_id with "-0" after "flair collapse"
flair
updated 3 hours ago by
GenoMax
150k • written 5 months ago by
anna_shin
• 0
0
votes
0
replies
65
views
Can I use glucose measured using two different devices in my study?
normalization
standardization
transformation
16 hours ago by
Faith
▴ 50
0
votes
2
replies
114
views
Limma model gives weird results
model
multivariate
Limma
updated 1 hour ago by
ATpoint
87k • written 18 hours ago by
leranwangcs
▴ 150
1
vote
3
replies
608
views
Snakemake - pipeline shut down without error
snakemake
19 hours ago by
bhumm
▴ 200
2
votes
2
replies
121
views
Source for `transcript_name` in GTFs
GTF
updated 1 hour ago by
Jorge - Ensembl
▴ 20 • written 22 hours ago by
gernophil
▴ 120
5
votes
5
replies
254
views
Tool:
Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and de-duplication using cutadapt
rad-seq
ddRADseq
demultiplexing
deduplication
1 day ago by
Rafal
▴ 10
0
votes
2
replies
117
views
How to normalised DNA sequencing depth for genomic variant discovery ?
normalisation
read-depth
variant-calling
updated 23 hours ago by
Ram
45k • written 1 day ago by
AIMAR
• 0
2
votes
4
replies
208
views
RNASeq featureCounts Help Needed
fungi
featurecounts
RNASeq
1 day ago by
SomeOne
▴ 170
0
votes
0
replies
81
views
PAUP* error with exporting result file
PAUP
SVDquartet
1 day ago by
ylkim9
• 0
0
votes
1
reply
105
views
I need to convert Axiom output to PLINK format I did not find annotation.db
Axiom
PLINK
apt-format-result
updated 1 day ago by
GenoMax
150k • written 1 day ago by
AlmuhayyaA
• 0
1
vote
3
replies
196
views
How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
normalization
rna-seq
updated 6 hours ago by
ATpoint
87k • written 1 day ago by
pipelinfections
• 0
0
votes
0
replies
104
views
Tool:
I packaged some tools in python pypi for Windows (fastqc, bowtie2, samtools)
python
pypi
11 hours ago by
Cris
• 0
0
votes
3
replies
268
views
Transcript ID
id
transcript
updated 1 day ago by
Meeru
• 0 • written 2 days ago by
cheong
• 0
0
votes
1
reply
140
views
Galaxy + RStudio
R
RNA-seq
RStudio
updated 1 day ago by
swbarnes2
14k • written 1 day ago by
justus
• 0
8
votes
18
replies
3.1k
views
8 follow
How to limit fasta header to 40 characters?
unix
seqkit
fasta
updated 1 day ago by
jena
▴ 320 • written 19 months ago by
fishingline37
• 0
1
vote
2
replies
199
views
Transcript level quantification and gene length scaling for rRNA depleted libraries
RNASeq
updated 1 day ago by
dsull
★ 7.4k • written 1 day ago by
marc.zimmerli
▴ 10
0
votes
0
replies
117
views
Model diagnostics for GAM (Generalised Additive Model)
gam
mgcv
generalized-additive-model
1 day ago by
Tuấn Anh
• 0
2
votes
5
replies
594
views
Forum:
Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
biotech
startup
updated 1 day ago by
Darked89
4.7k • written 5 days ago by
Novoo
▴ 10
1
vote
1
reply
172
views
landscape of RNA types and their functions/ scRNA
transcriptomics
scRNA
biology
updated 2 days ago by
ATpoint
87k • written 2 days ago by
Ariadna
▴ 20
1
vote
2
replies
186
views
Is vg toolkit suitable for haplotype calling?
pangenome
haplotype
vg
6 hours ago by
Pau
• 0
0
votes
0
replies
111
views
Dfam annotations
dfam
2 days ago by
frarodmar17
• 0
0
votes
3
replies
380
views
miRNA alignment and count generation
aligment
Mapping
Bowtie
miRNAs
updated 2 days ago by
i.sudbery
21k • written 5 days ago by
omicon
▴ 40
1
vote
2
replies
215
views
Cytoscape Node Size Mapping
Cytoscape
2 days ago by
William
▴ 20
1
vote
2
replies
259
views
Deeptools: Custom gcbias plots in R possible?
computegcbias
deeptools
2 days ago by
RJDan
• 0
0
votes
3
replies
807
views
HOMER Motif Analysis-- homer2 error
rna-seq
homer
updated 2 days ago by
ATpoint
87k • written 15 months ago by
HypoGG
• 0
4
votes
0
replies
197
views
Herald:
The Biostar Herald for Monday, April 21, 2025
herald
3 days ago by
Biostar
3.5k
0
votes
4
replies
272
views
Forum:
ELISA‑Focused Lab Management & Analysis App – Would You Use It?
biotech
startup
updated 2 days ago by
Ram
45k • written 3 days ago by
Novoo
▴ 10
0
votes
0
replies
217
views
Job:
Research Fellow in Cancer Evolution (Deadline 30 Apr 2025)
Cancer-Phylogenetics
Chromosomal-Instability
updated 1 day ago by
Ram
45k • written 3 days ago by
Bingxin
• 0
1
vote
10
replies
872
views
Proper preprocessing for ML after limma, quantile normalization and log2 transformation: Is standardization still necessary?
featureselection
microarray
preprocessing
updated 22 hours ago by
Mensur Dlakic
★ 29k • written 5 days ago by
Sib
▴ 60
0
votes
0
replies
211
views
How to get gene count and transcript count from Stringtie
Stringtie
updated 4 days ago by
GenoMax
150k • written 4 days ago by
Abieskawa
• 0
1
vote
1
reply
349
views
Any recommendation for calculating Fu and Li's D using RStudio?
PopGenome
updated 3 days ago by
Michael
55k • written 6 days ago by
Chatchapon
• 0
1
vote
4
replies
444
views
Running out of disc space with wsl2
Memory
WSL2
capacity
Disc
updated 4 days ago by
Mensur Dlakic
★ 29k • written 5 days ago by
vladimir_vinarsky
• 0
0
votes
2
replies
297
views
Filtering vcf file for variants - including non-selected variants
bedtools
calling
variant
bcftools
4 days ago by
andrebolerbarros
• 0
0
votes
4
replies
450
views
UCSC's NCBI RefSeq Track tables: header differences
ucsc-genome-browswer
refseq
ncbi
5 days ago by
Synanth
• 0
3
votes
2
replies
1.4k
views
How do you do differential splicing using edgeR command diffSpliceDGE?
differential-splicing
diffSpliceDGE
edger
updated 5 days ago by
Gordon Smyth
★ 7.9k • written 3.2 years ago by
Assa Yeroslaviz
★ 1.9k
0
votes
0
replies
265
views
sequenced noise elimination in searching for snp
snp
sequencing
virus
6 days ago by
gagi1993
• 0
0
votes
1
reply
326
views
Issue with Agilent 2100 BioAnalyzer HS DNA Assay Trace
library-preparation
DNA
bioanalyzer
updated 6 days ago by
GenoMax
150k • written 6 days ago by
Beatrice
• 0
1
vote
2
replies
846
views
QIAseq 16S/ITS Screening Panel Primers?
16s
primers
metagenomics
ITS
updated 6 days ago by
GenoMax
150k • written 3.2 years ago by
Isaac
• 0
3
votes
2
replies
446
views
Analysing gene CNV from TCGA using TCGAbiolinks
TCGA
2 days ago by
Matt
• 0
1
vote
3
replies
431
views
How to use LOEUF plugin in VEP?
LOEUF
VEP
updated 6 days ago by
GenoMax
150k • written 7 days ago by
Sd
• 0
0
votes
0
replies
442
views
Trouble with CIBERSORTx: All P-values > 0.05, Low Correlation, High RMSE – What Could Be Going Wrong?
R
CIBERSORTx
CIBERSORT
script
updated 6 days ago by
GenoMax
150k • written 6 days ago by
Pumla
• 0
121,036 results • Page
1 of 2421
Recent Votes
Answer: Source for `transcript_name` in GTFs
Answer: Source for `transcript_name` in GTFs
Answer: Obtain genome coordinates for a DNA sequence using ENSEMBL API
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
Comment: How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
How to create a phylogenetic tree from 30 VCF files
Recent Locations •
All
Poland,
just now
United Kingdom,
just now
Brazil,
3 minutes ago
Taiwan,
4 minutes ago
Leuven, Belgium,
6 minutes ago
United States,
8 minutes ago
Italy,
8 minutes ago
Recent Awards •
All
Popular Question
to
marongiu.luigi
▴ 740
Popular Question
to
lastpaulo
• 0
Popular Question
to
leranwangcs
▴ 150
Scholar
to
bhumm
▴ 200
Centurion
to
jena
▴ 320
Teacher
to
Sam
★ 4.8k
Popular Question
to
predeus
★ 2.1k
Recent Replies
Comment: DRAGEN FILTER
by
theresia.celine
• 0
Hi, thank you for the information, I already obtained my VCF file with the default filter, but I'm questioning the reliability of this defa…
Comment: DRAGEN FILTER
by
theresia.celine
• 0
Hi, I'm using DRAGEN 4.2.7, which perform DRAGEN-ML, that's why the default filter is QUAL > 3. But I'm still wondering if this threshold i…
Comment: DRAGEN FILTER
by
DBScan
▴ 480
Which DRAGEN version are you using? The filtering heavily depends on which DRAGEN version and commands you have used.
Comment: DRAGEN FILTER
by
GenoMax
150k
DRAGEN uses an optimized version of GATK. See --> https://gatk.broadinstitute.org/hc/en-us/articles/4410456501915-Functional-equivalence-in…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
AIMAR
• 0
I've 12 normal samples. Thanks for the share
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
AIMAR
• 0
Understood sir.
Comment: Limma model gives weird results
by
ATpoint
87k
> However I got 0 significant contig. That alone does not necessarily indicate a problem. There could in reality be non differences, or no…
Answer: Source for `transcript_name` in GTFs
by
Jorge - Ensembl
▴ 20
Hi! [Transcript naming][1] is part of the [Ensembl gene annotation pipeline][2]. There will be further review for species [annotated both b…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
GenoMax
150k
Do you have enough samples to create a private PON? GATK recommends a minimum of 40. If not you can use public 1000 genomes PON. https://g…
Comment: Rna-seq data
by
GenoMax
150k
You have to keep in mind that the portal you link only aggregates datasets for : **on Infectious and Immune-mediated Diseases (IID)**
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
Pierre Lindenbaum
166k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
1769mkc
★ 1.3k
add your command as text not as image
Comment: What is the best way to know if a pair of genes is random?
by
Ana
▴ 10
Yes, but the results are not exciting... I appreciate your help though!
Comment: Is vg toolkit suitable for haplotype calling?
by
Pau
• 0
What I mean is: from a set of long reads and a pangenome with no haplotype paths (because it was built with unphased vcf) obtain the differ…
Comment: How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
by
ATpoint
87k
Because data are heterogeneous, on entirely different scales, assay (vastly) different amounts of genes and are inherently incomparable qua…
Traffic: 4363 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6