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Recent Replies
Answer: Pathway enrichment analysis on time-series data by filtering out age comparisons
by
nux
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I think you can do this prior the enrichment. During the differential expression analysis, just add the age (or what ever quantifiers you h…
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You could use FIMO to discover binding sites from MEME motif probability tables: https://meme-suite.org/meme/doc/fimo.html
Comment: Efficiently find regions in bed file that are within start and end regions of an
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One way is to use BEDOPS `bedmap`:
bedmap --echo --echo-map-id --range 100 --delim '\t' B.bed A.bed > answer.bed
Via: https://github.…
Comment: ADMIXTURE Segmentatio fault
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Mwangana
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I have re-run the analysis in linux ubuntu in virtualbox, it runs perfectly - no segmentation fault.
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The main question to answer would be how do you know batch correction worked properly and did not introduce artefacts and overt biases?
I'v…
Comment: RNA-Sequencing Analysis when control samples paired-end and tumour samples singl
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You can see metadata for the entire series here: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP392517&o=acc_s%3Aa
This is rather unusu…
Comment: RNA-Sequencing Analysis when control samples paired-end and tumour samples singl
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Hi, ENA accession number is SRP392517. Thanks!
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There are many ways in which seemingly unrelated proteins could be functionally linked. I think you will need to figure it out on your own.…
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I don't understand what is a "pair" here. You should put a snippet of SplitFasta()
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> Did you find an answer?
Unfortunately, no.
> I was wondering if its better to use HTOdemux rather than the cellranger's version?
I tri…
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In case somebody else stumbles upon this question, `-HH` disables the column numbers:
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bcftools query -HH -f '%CHROM\t%POS\t%REF\t%AL…
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Please consider accepting the original answer (green check mark) to provide closure to this thread).
Comment: RNA-Sequencing Analysis when control samples paired-end and tumour samples singl
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> It seems to be that the control sample runs are paired end data with 2 fasta files whilst the 12 tumour samples are only single-end read…
Comment: Nextflow: split a FASTA file into 5 parts to enable parallel processing
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GenoMax
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It may be useful to also indicate how you are running this code? Are you supplying a single fasta file name or five pieces?
> [[a, a1], [b…
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