19 minutes ago by
AlmuhayyaA
•
0
0
votes
0
replies
5
views
0
votes
1
reply
17
views
0
votes
0
replies
32
views
0
votes
0
replies
38
views
0
votes
3
replies
214
views
0
votes
1
reply
83
views
8
votes
18
replies
3.1k
views
8 follow
updated 13 hours ago by
jena
▴
320
•
written 19 months ago by
fishingline37
•
0
836
votes
167
replies
174k
views
111 follow
updated 10 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
1
vote
2
replies
143
views
updated 16 hours ago by
dsull
★
7.4k
•
written 19 hours ago by
marc.zimmerli
▴
10
0
votes
0
replies
67
views
20 hours ago by
Tuấn Anh
•
0
2
votes
5
replies
529
views
1
vote
1
reply
138
views
1
vote
1
reply
115
views
updated 8 hours ago by
Jordan M Eizenga
▴
700
•
written 23 hours ago by
Pau
•
0
0
votes
0
replies
78
views
23 hours ago by
frarodmar17
•
0
0
votes
3
replies
343
views
1
vote
2
replies
177
views
1
vote
2
replies
219
views
1 day ago by
RJDan
•
0
0
votes
3
replies
770
views
4
votes
0
replies
154
views
0
votes
4
replies
227
views
0
votes
0
replies
170
views
1
vote
8
replies
689
views
0
votes
0
replies
174
views
1
vote
1
reply
311
views
updated 2 days ago by
Michael
55k
•
written 5 days ago by
Chatchapon
•
0
1
vote
4
replies
387
views
updated 3 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
vladimir_vinarsky
•
0
0
votes
2
replies
259
views
0
votes
4
replies
401
views
4 days ago by
Synanth
•
0
3
votes
2
replies
1.3k
views
updated 4 days ago by
Gordon Smyth
★
7.9k
•
written 3.2 years ago by
Assa Yeroslaviz
★
1.9k
0
votes
0
replies
230
views
5 days ago by
gagi1993
•
0
0
votes
1
reply
285
views
1
vote
2
replies
810
views
3
votes
2
replies
406
views
1
vote
3
replies
394
views
0
votes
0
replies
396
views
0
votes
1
reply
278
views
updated 5 days ago by
GenoMax
150k
•
written 5 days ago by
pinheirofabiano
▴
110
0
votes
0
replies
1.4k
views
1
vote
3
replies
376
views
1
vote
3
replies
378
views
0
votes
5
replies
406
views
3
votes
2
replies
340
views
0
votes
0
replies
267
views
0
votes
1
reply
370
views
updated 6 days ago by
Istvan Albert
102k
•
written 7 days ago by
Eltercertopico
•
0
1
vote
4
replies
548
views
6 days ago by
Fatemeh
▴
40
1
vote
3
replies
425
views
1
vote
2
replies
369
views
0
votes
1
reply
346
views
9
votes
5
replies
632
views
6 follow
updated 2 days ago by
kalavattam
▴
350
•
written 7 days ago by
shelkmike
★
1.5k
1
vote
9
replies
776
views
0
votes
0
replies
269
views
0
votes
3
replies
399
views
Recent Votes
Recent Locations •
All
China, just now
South Korea, 1 minute ago
Machhagan, 2 minutes ago
Netherlands, 3 minutes ago
Norway stands with Ukraine, 5 minutes ago
Belgium, Brussels, 5 minutes ago
Oviedo, 6 minutes ago
Recent Awards •
All
Popular Question to
sarahmanderni
▴
120
Popular Question to
doncheng1
•
0
Popular Question to
xiaoleiusc
▴
140
Teacher to
Zhenyu Zhang
★
1.3k
Popular Question to
pablo
▴
330
Recent Replies
Comment: Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and
by
ATpoint
87k
I just had a brief look, some feedback:
- I agree that workflow managers are not always strictly necessary, but if you do bash scripts the…
Comment: How to convert and annotate apt-probeset-genotype into PLINK format
by
AlmuhayyaA
•
0
Hi Kevin,
where I can find Axiom.db for apt-format-result --calls-file calls.csv --annotation-file Axiom.db --export-plink-file new? I am …
Comment: How to convert and annotate apt-probeset-genotype into PLINK format
by
AlmuhayyaA
•
0
hi all, did you get the answer regrading where can we find Axiom.db?
Comment: Adapter content in FASTQ file
by
xiaoleiusc
▴
140
I just realized that the adapter sequence depends on the library preparation kit used. For example, our sequencing facility used the Illumi…
Comment: Galaxy + RStudio
by
swbarnes2
14k
Why wouldn't it be possible? The DESeq2 manual has a large section devoted to different ways of importing data in different formats; a plai…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
**No, that’s not correct.** I carefully read your response multiple times (at least 10 times) before formulating my follow-up questions bas…
Comment: Transcript ID
by
Meeru
•
0
Yes, they’re the same. The “-0” is likely just an extra tag from a tool or database, not part of the official Ensembl ID.
Comment: Transcript ID
by
cheong
•
0
Hi ATpoinrt,
Thank you!
I saw this in the results generated by a software called flair (https://doi.org/10.1038/s41467-020-15171-6)
…
Comment: Is vg toolkit suitable for haplotype calling?
by
Jordan M Eizenga
▴
700
When you say "extract the haplotypes", are you referring to the read alignments themselves, or do you mean inferring the underlying haploty…
Answer: How to limit fasta header to 40 characters?
by
jena
▴
320
Looks like a job for [bioawk][1]. For example, if you just need the IDs (like in the seqkit answer above), you can do this:
bioawk -c …
Comment: Transcript level quantification and gene length scaling for rRNA depleted librar
by
dsull
★
7.4k
Haven’t had time to think about this in its entirety but lncRNAs are poorly annotated (in part because their biology is tricky) and TPM len…
Comment: Transcript level quantification and gene length scaling for rRNA depleted librar
by
ATpoint
87k
Interesting observation. Can you add plots to illustrate this? For example for this gene, the salmon output per samples, the tximport resul…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Mensur Dlakic
★
29k
I have no good idea how to work with data of unknown origin and unknown pre-processing steps.
Somehow, you seem to be reading my answers s…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
Unfortunately, I cannot use raw data because I am teaching students who are not yet able to analyze raw data. Instead, we use a series matr…
Answer: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
Darked89
4.7k
I think the best is to strip functionalities to bare essentials: secure storage of the data plus metadata and the backups. For that you may…
Traffic: 2412 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6