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There are too few valid genes in the input matrix expr_filtered, possibly because after the goodSamplesGenes filtering, only the grey modul…
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please read this paper:
[ComBat-seq][1]
[1]: https://academic.oup.com/nargab/article/2/3/lqaa078/5909519
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I asked the same question months ago...
[https://www.biostars.org/p/9604385/][1]
[1]: https://www.biostars.org/p/9604385/
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Go with TPM, when you use TPM, the sum of all TPMs in each sample are the same. This makes it easier to compare the proportion of reads tha…
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Thank you for your reply, but when I tried to log in to ANVIL, I was told that I didn't have access, so I tried to ask for help.
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Check this out: [Biorixv][1]
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Is it hard for you to list the number of samples and runs? If you cannot figure it out, at least you can show the number of files and their…
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Then just upload the csv/tsv to LLMs.
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would you mind posting this as a separate question, then linking to this question and @ me?
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Sorry, I thought they are the same. I have two gene expression profiles(each with one column of gene name, and another column of fold chang…
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