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Recent Replies
Answer: Batch effect
by
pinheirofabiano
▴
100
please read this paper:
[ComBat-seq][1]
[1]: https://academic.oup.com/nargab/article/2/3/lqaa078/5909519
Answer: convert Gene ID to Gene Symbol
by
pinheirofabiano
▴
100
I asked the same question months ago...
[https://www.biostars.org/p/9604385/][1]
[1]: https://www.biostars.org/p/9604385/
Answer: TPM vs FPKM divergence at high values
by
pinheirofabiano
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100
Go with TPM, when you use TPM, the sum of all TPMs in each sample are the same. This makes it easier to compare the proportion of reads tha…
Comment: Help finding GTEx v8 file
by
蒲蒲
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0
Thank you for your reply, but when I tried to log in to ANVIL, I was told that I didn't have access, so I tried to ask for help.
Comment: Blastx issue
by
JustinZhang
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Check this out: [Biorixv][1]
[1]: https://www.biorxiv.org/content/10.1101/2024.08.18.608522v1.full
Comment: How to test the similarity of two gene expression profiles
by
JustinZhang
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130
Is it hard for you to list the number of samples and runs? If you cannot figure it out, at least you can show the number of files and their…
Comment: How to test the similarity of two gene expression profiles
by
JustinZhang
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130
Then just upload the csv/tsv to LLMs.
Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
by
LauferVA
4.7k
would you mind posting this as a separate question, then linking to this question and @ me?
Comment: How to test the similarity of two gene expression profiles
by
htchd
•
0
Sorry, I thought they are the same. I have two gene expression profiles(each with one column of gene name, and another column of fold chang…
Comment: How to test the similarity of two gene expression profiles
by
ATpoint
87k
I asked two questions, so a "yes" is not informative.
Comment: Convert bed12 to GFF
by
cmdcolin
★
4.2k
nice work on bed2gff...managed to use it! potentially might make some feature requests but otherwise works well
Comment: How to test the similarity of two gene expression profiles
by
GenoMax
150k
There may be a R package that does this but keep in mind that in order to do this comparison you would need to download the raw data from s…
Comment: Structural bioinformatics workshop
by
GenoMax
150k
Please do not post identical information in multiple threads.
Comment: How to test the similarity of two gene expression profiles
by
htchd
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0
I want to compare all the genes, not a small subset.
Comment: How to test the similarity of two gene expression profiles
by
htchd
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Yes. I want to see if there's a statistical test for this
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