0
votes
1
reply
17
views
2
votes
1
reply
117
views
0
votes
0
replies
49
views
6 hours ago by
Physalia-courses
★
2.6k
0
votes
1
reply
56
views
836
votes
167
replies
173k
views
111 follow
updated 2 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
0
votes
1
reply
76
views
0
votes
1
reply
252
views
updated 15 hours ago by
Gordon Smyth
★
7.9k
•
written 5 days ago by
Gerard
▴
10
0
votes
0
replies
88
views
updated 19 hours ago by
GenoMax
150k
•
written 19 hours ago by
Shicheng Guo
★
9.6k
1
vote
2
replies
454
views
4
votes
10
replies
767
views
6 follow
updated 20 hours ago by
cmdcolin
★
4.2k
•
written 11 days ago by
jahnreinhard.ringger
•
0
0
votes
0
replies
84
views
2
votes
3
replies
521
views
updated 22 hours ago by
Hao
▴
10
•
written 2.6 years ago by
shangguandong1996
▴
30
1
vote
2
replies
280
views
2
votes
9
replies
425
views
updated 8 minutes ago by
dariober
15k
•
written 3 days ago by
megancgrdnr
•
0
3
votes
0
replies
104
views
0
votes
2
replies
245
views
1
vote
1
reply
196
views
1
vote
0
replies
82
views
1
vote
2
replies
206
views
0
votes
1
reply
119
views
0
votes
0
replies
97
views
3
votes
4
replies
258
views
14
votes
3
replies
11k
views
0
votes
3
replies
280
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 2 days ago by
Sib
▴
60
0
votes
2
replies
867
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 5.9 years ago by
Kanoo
•
0
0
votes
2
replies
232
views
3
votes
4
replies
281
views
updated 1 day ago by
shelkmike
★
1.5k
•
written 2 days ago by
matthewmerkin32
•
0
0
votes
0
replies
141
views
3 days ago by
Amos Bairoch
▴
130
0
votes
2
replies
270
views
0
votes
0
replies
265
views
5
votes
5
replies
445
views
2 days ago by
Fatemeh
▴
40
0
votes
4
replies
381
views
updated 3 days ago by
pinheirofabiano
▴
110
•
written 5 days ago by
majorprogeria
•
0
0
votes
1
reply
208
views
1
vote
10
replies
568
views
updated 3 days ago by
JustinZhang
▴
130
•
written 4 days ago by
htchd
•
0
3
votes
3
replies
244
views
3 days ago by
pinheirofabiano
▴
110
0
votes
0
replies
158
views
4 days ago by
Ana
•
0
0
votes
5
replies
1.7k
views
updated 4 days ago by
香
•
0
•
written 2.3 years ago by
gupta00aritra
•
0
0
votes
1
reply
958
views
1
vote
2
replies
234
views
4 days ago by
rahma.khoualdia
•
0
0
votes
0
replies
202
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
HarperReed
•
0
0
votes
2
replies
256
views
2
votes
5
replies
303
views
0
votes
0
replies
164
views
0
votes
1
reply
222
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
Jack
•
0
0
votes
4
replies
343
views
5
votes
4
replies
391
views
0
votes
0
replies
184
views
4 days ago by
tyasird
▴
10
0
votes
16
replies
755
views
updated 4 days ago by
JustinZhang
▴
130
•
written 6 days ago by
Maarten
•
0
2
votes
4
replies
307
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
WaspInSpace
•
0
0
votes
0
replies
199
views
4 days ago by
UCSDBioSci
▴
30
Recent Votes
Recent Locations •
All
Memphis, TN, just now
WCIP | Glasgow | UK, 2 minutes ago
Ghent & Brussels, Belgium, 4 minutes ago
United States, 4 minutes ago
Leuven, Belgium, 5 minutes ago
Germany, 6 minutes ago
Italy, 7 minutes ago
Recent Awards •
All
Popular Question to
Jaykumar
▴
50
Popular Question to
theodore
▴
110
Popular Question to
Assa Yeroslaviz
★
1.9k
Popular Question to
oghzzang
▴
50
Popular Question to
Shicheng Guo
★
9.6k
Autobiographer to
ecSeq Bioinformatics
▴
20
Recent Replies
Comment: TPM vs FPKM divergence at high values
by
dariober
15k
Yes, the axes are both logarithmic, the difference is in the input data with FPKM being log'd and TPM being raw.
Comment: SyntaxError in file /snakefile, line 22: invalid decimal literal: None
by
ATpoint
87k
I am not a SnakeMake person but what is the `f` supposed to be? `f'/{{...`
Comment: TPM vs FPKM divergence at high values
by
Istvan Albert
102k
I think both are logarithmic axes. Just one is in exponential notation the other is not.
Comment: HIC-pro with Forward and reverse reads not paired even when I use their test dat
by
GenoMax
150k
Looks like the original dataset has an equal number of records based on the lines so that input looks correct.
$ wc -l SRR400264_*
…
Comment: Error with running cellranger-atac count
by
GenoMax
150k
> Before processing the fastq files with the count command, I was trimming primer & linker sequences according to a paper I was looking at.…
Comment: TPM vs FPKM divergence at high values
by
ATpoint
87k
Good catch, that makes sense. As I said above, mathematically I don't see a reason for a non-linear relationship if on normal scale, and I …
Comment: DWLS error Dmat and dvec are incompatible!
by
Ana
•
0
Hi, I am having the same issue. Were you able to solve it?
Thanks in advance.
Comment: TPM vs FPKM divergence at high values
by
dariober
15k
Looking at the range of the data, it seems your input FPKM is very likely on the log scale, i.e. your input is log(FPKM). The TPM data inst…
Answer: Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcom
by
wojdyr
▴
60
Parsers work with file syntax, so generally there are no mmCIF parsers for enzymes or for receptor proteins, just parsers for mmCIF files.
…
Comment: Snakemake Global Environment Container
by
meetmet
▴
10
Many thanks!
I completely missed this option.
Cheers.
Comment: ONT Live-Basecalling Issue?
by
LauferVA
4.7k
Yikes. This is scary. I'd definitely contact ONT.
No other error messages? Regarding this:
> What is the issue here? And is a potential s…
Answer: Using DEXseq on kallisto tsv outputs ?
by
Gordon Smyth
★
7.9k
Inputting transcript (RNA isoform) quantifications from kallisto into tools like DEXSeq that are designed for exons is not ideal because th…
Comment: ChIP-seq gene blacklist for Rattus norvegicus
by
GenoMax
150k
https://kilthub.cmu.edu/articles/dataset/Alternate_gene_annotations_for_rat_macaque_and_marmoset_for_single_cell_RNA_and_ATAC_analyses/2117…
Traffic: 2465 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6