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Comment: Rna-seq data
by
GenoMax
150k
You have to keep in mind that the portal you link only aggregates datasets for : **on Infectious and Immune-mediated Diseases (IID)**
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Pierre Lindenbaum
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> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
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1769mkc
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add your command as text not as image
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Ana
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Yes, but the results are not exciting... I appreciate your help though!
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Pau
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What I mean is: from a set of long reads and a pangenome with no haplotype paths (because it was built with unphased vcf) obtain the differ…
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ATpoint
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Because data are heterogeneous, on entirely different scales, assay (vastly) different amounts of genes and are inherently incomparable qua…
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This is a known problem happening with some of the normalization methods. As long as the detection P-value is ok, you can keep these probes…
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Yes, check out RefSeq (NCBI), Ensembl, and UCSC Genome Browser they offer genomic data under permissive licenses that generally allow redis…
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You can find promoter and insulator data or other gene expression data in the NIAID Data Ecosystem: https://data.niaid.nih.gov/
The interf…
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You can use the NIAID Data Ecosystem to search for genomic data: https://data.niaid.nih.gov/
And you can filter results by conditions of…
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The NIAID Data Ecosystem allows you to search across dozens of repositories (including GEO, but about 40 others as well) to find RNA-seq da…
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The NIAID Data Ecosystem has a searchable interface for finding biomanufacturing data, as well as data related to drug trials, pharmaceutic…
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Hi anna, do you know the answer now?
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Comment: Limma model gives weird results
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Gordon Smyth
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The code that you show cannot be correct, because the `topTable` `coef` refers to a term that is not in the design matrix. The code as show…
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