updated 3 hours ago by
Gordon Smyth
★
7.8k
•
written 11 hours ago by
Apprentice
▴
170
0
votes
1
reply
75
views
1
vote
1
reply
197
views
4
votes
6
replies
309
views
1
vote
2
replies
113
views
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
3
votes
5
replies
189
views
updated 2 hours ago by
Billy Rowell
▴
500
•
written 15 hours ago by
jahnreinhard.ringger
•
0
0
votes
12
replies
297
views
2
votes
2
replies
139
views
0
votes
0
replies
60
views
17 hours ago by
Physalia-courses
★
2.6k
0
votes
2
replies
120
views
14 hours ago by
Assa Yeroslaviz
★
1.9k
8
votes
4
replies
349
views
1
vote
9
replies
323
views
0
votes
0
replies
95
views
1
vote
3
replies
184
views
0
votes
1
reply
138
views
0
votes
0
replies
100
views
1 day ago by
karlensberg
•
0
0
votes
9
replies
378
views
updated 1 day ago by
Pierre Lindenbaum
165k
•
written 2 days ago by
totoroGirl
•
0
1
vote
1
reply
163
views
1 day ago by
Franck
•
0
0
votes
0
replies
89
views
5
votes
9
replies
429
views
updated 20 hours ago by
colindaven
7.3k
•
written 2 days ago by
alexandrakortsi
•
0
5
votes
4
replies
224
views
0
votes
1
reply
320
views
updated 1 day ago by
Jouni Sirén
▴
630
•
written 6 days ago by
zhengluo
•
0
0
votes
0
replies
110
views
0
votes
2
replies
336
views
1
vote
8
replies
1.5k
views
6 follow
80
votes
32
replies
31k
views
18 follow
updated 13 hours ago by
Paulo
▴
10
•
written 11.2 years ago by
Istvan Albert
102k
1
vote
4
replies
311
views
2 days ago by
dk7258859
•
0
0
votes
1
reply
199
views
updated 2 days ago by
i.sudbery
21k
•
written 3 days ago by
Alana Conceição Maia Lessa
•
0
0
votes
1
reply
217
views
updated 2 days ago by
colindaven
7.3k
•
written 3 days ago by
gulin
•
0
0
votes
5
replies
296
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
paulanavarrete116
•
0
2
votes
2
replies
287
views
8
votes
12
replies
459
views
0
votes
3
replies
227
views
0
votes
2
replies
232
views
1
vote
1
reply
169
views
0
votes
4
replies
262
views
1
vote
5
replies
463
views
1
vote
1
reply
191
views
2
votes
2
replies
345
views
updated 1 day ago by
lieven.sterck
15k
•
written 6 days ago by
Jl
•
0
1
vote
5
replies
305
views
updated 15 hours ago by
Istvan Albert
102k
•
written 3 days ago by
Ana
•
0
0
votes
1
reply
195
views
updated 3 days ago by
lieven.sterck
15k
•
written 3 days ago by
Naila
•
0
1
vote
4
replies
264
views
3 days ago by
SomeOne
▴
170
1
vote
7
replies
359
views
updated 3 days ago by
yura.grabovska
▴
760
•
written 3 days ago by
zhang616123
•
0
0
votes
3
replies
260
views
updated 2 days ago by
Bastien Hervé
6.2k
•
written 3 days ago by
Jonathan Yoou
▴
70
0
votes
0
replies
161
views
3 days ago by
soledad.esteban
•
0
0
votes
4
replies
268
views
1
vote
14
replies
678
views
updated 3 days ago by
colindaven
7.3k
•
written 4 days ago by
ZuelTech
•
0
1
vote
4
replies
1.6k
views
updated 4 days ago by
swbarnes2
14k
•
written 6 days ago by
Wu-Sheng Zhang
•
0
1
vote
4
replies
341
views
3
votes
8
replies
388
views
Recent Votes
Recent Locations •
All
United States, 11 minutes ago
Colombia, 19 minutes ago
United States, 24 minutes ago
United States, 1 hour ago
United States, 1 hour ago
United States, 1 hour ago
Menlo Park, CA, 1 hour ago
Recent Awards •
All
Popular Question to
Michael
55k
Good Answer to
Khader Shameer
18k
Teacher to
Billy Rowell
▴
500
Popular Question to
SushiRoll
▴
140
Popular Question to
Assa Yeroslaviz
★
1.9k
Great Question to
Manu Prestat
4.1k
Popular Question to
buffealo
▴
130
Recent Replies
Comment: Extract length of sample sequence from vcf
by
Billy Rowell
▴
500
If you don't want to mess with compiling bleeding-edge bcftools, you could write the same thing in awk. There's no need to filter out the …
Answer: How to obtain TPM data after batch effect correction from count data obtained us
by
Gordon Smyth
★
7.8k
I would be using divided counts for transcript-level analyses from RSEM, and using log-CPM from the divided counts for clustering, for the …
Answer: Missing short indels from vcf
by
LauferVA
4.7k
Hey @kbranger ,
IIUC, you have a ~7 bp deletion visible in IGV (with a 7D CIGAR string and ~17–20× depth) that disappears after bcftools…
Comment: Modify read groups in BAM file
by
1769mkc
★
1.2k
is this onboard or basespace or ICA? dragen
Comment: MultiQC_report
by
GenoMax
150k
That is pretty odd. Like you were advised above you could try to open an issue with the devs. I don't think I have ever seen this problem. …
Answer: Facing issue with output of nextflow pipeline
by
mmhryc
•
0
With nextflow you don't want to manage paths manually. Instead of creating a hardcoded path you should let it output the results into whate…
Answer: Choosing the best clustering method for a certain methylation data
by
5heikki
11k
[Affinity propagation][1] is the answer to all my clustering needs
[1]: https://utstat.toronto.edu/reid/sta414/frey-affinity.pdf
Comment: Modify read groups in BAM file
by
Alex
•
0
Thanks Istvan, this seems like a reasonable enough solution that could be scripted across large batches of files. I'll give it a shot. Was …
Comment: MultiQC_report
by
AIMAR
•
0
No I don't, when I said errors I mean it shows 267 samples for the adapter content while I just have 50 samples of paired-end read = 100 re…
Comment: MultiQC_report
by
GenoMax
150k
> in this report multiqc missed 3 samples (6 reports ) and still made the error with the adapter content.
Do you have any oddities in samp…
Answer: Extract length of sample sequence from vcf
by
Billy Rowell
▴
500
This is hacky and definitely not prod ready, but if the goal is to get the length and not the sequence, you could use bcftools/paste/bc to …
Comment: Extract length of sample sequence from vcf
by
LauferVA
4.7k
you probably want to be working wihta bam file for this ..
Comment: MultiQC_report
by
AIMAR
•
0
![enter image description here][1]
Here is the screenshot, in this report multiqc missed 3 samples (6 reports ) and still made the error…
Comment: Extract length of sample sequence from vcf
by
Istvan Albert
102k
Once you slice the reference genome, the positions in the VCF won't match the reference. For your method to work you would need to shift th…
Comment: Introducing Grantease: Go From RFA to First Draft Grant Proposal in 15 Minutes
by
jared.andrews07
★
18k
The source is this tool's literature review feature with the prompt "Impacts of AI on human creativity". The references contain some charac…
Traffic: 1190 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6