Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
120,151 results • Page
1 of 2404
Sort: Rank
Rank
Views
Votes
Replies
1
vote
1
reply
37
views
What does diffbind profile plot show exactly?
DiffBind
CHiP-Seq
updated 1 hour ago by
GenoMax
148k • written 2 hours ago by
SpartanII
• 0
0
votes
0
replies
26
views
Disease-Disease Association data
ontology
disease
OMIM
HPO
gene
2 hours ago by
singhankit973
• 0
4
votes
3
replies
124
views
ChromHMM - annotation of chromatin states
state
Annoation
updated 1 hour ago by
e.r.zakiev
▴ 230 • written 12 hours ago by
Bioinformatics_16
▴ 10
3
votes
3
replies
109
views
Vcf Filtering
Vcf
Filtering
AF
updated 2 hours ago by
GenoMax
148k • written 6 hours ago by
Marc Ibanez
• 0
0
votes
0
replies
33
views
News:
Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 17-19, 2025 in Berlin, Germany)
transcriptomics
scRNAseq
singleCell
4 hours ago by
ecSeq Bioinformatics
• 0
825
votes
169
replies
164k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 4 months ago by
Biostar
3.3k • written 8.1 years ago by
Istvan Albert
102k
0
votes
2
replies
3.7k
views
How to Clump In Plink?
PLINK
GWAS
updated 4 hours ago by
meggo
• 0 • written 2.6 years ago by
Thorerges
▴ 10
2
votes
7
replies
145
views
Adding p value above plot
p
DESeq2
value
violin
boxplot
updated 5 hours ago by
marco.barr
▴ 170 • written 5 hours ago by
a.stef.44
▴ 10
0
votes
1
reply
116
views
Use of Pval v.s. Padj Statistic in Pre-Ranked GSEA Analysis
Gene
Ontology
GSEA
RNA-Seq
updated 5 hours ago by
i.sudbery
21k • written 16 hours ago by
BioTinker
• 0
0
votes
0
replies
37
views
News:
Online Course: Spatial Omics in R/Bioconductor | 19-21 May 2025
Spatial-Omics
Bioconductor
Tidyverse
Omics
7 hours ago by
Physalia-courses
★ 2.6k
0
votes
1
reply
54
views
Bionumerics installation files and tutorials after discontinuation
discontinued
Bionumerics
updated 1 hour ago by
GenoMax
148k • written 7 hours ago by
Mad104301
• 0
0
votes
0
replies
53
views
WGCNA: Can we use high power for signed network?
Powerselection
RNA-seqdata
WGCNA
Networkanalysis
8 hours ago by
Vinesh
▴ 10
1
vote
1
reply
98
views
How to trim sequences
trimming
sequencing
phylogenetics
updated 13 hours ago by
Mensur Dlakic
★ 28k • written 16 hours ago by
PF
• 0
0
votes
0
replies
68
views
Job:
Postdoctoral Fellow (Quantitative Modeling Group)
Bioengineering
Computational-Biology
updated 16 hours ago by
Ram
44k • written 17 hours ago by
BerkeleyLab
▴ 70
0
votes
1
reply
100
views
How to download metadata for the Broad Firehose RNA-seq data?
metadata
tcga
rnaseq
updated 16 hours ago by
GenoMax
148k • written 19 hours ago by
mebius_band
• 0
0
votes
4
replies
306
views
Interpreting Varied Survival Times in TCGA-BRCA Data
Survival
Kaplan-Meier
TCGA
analysis
survival
curves
updated 10 minutes ago by
wenbinm
▴ 40 • written 15 days ago by
Siqi
• 0
1
vote
2
replies
412
views
Web- based bioinformatics tool/s for identification of cysteine-rich proteins
cysteine
proteins
updated 20 hours ago by
Mensur Dlakic
★ 28k • written 5 months ago by
lukhanyomakhabane
▴ 30
1
vote
2
replies
130
views
Reducing runtime of low-score alignments
python
pairwise-alignment
alignment
updated 9 hours ago by
Mark
★ 1.6k • written 21 hours ago by
benjlishani7
• 0
5
votes
9
replies
264
views
constructing de novo assembly of plant short reads
short
reads
assembly
plants
11 hours ago by
analyst
▴ 50
0
votes
0
replies
72
views
News:
Course live online Intro Bayesian Analysis, February 17th-21st, 2025
python
bayesian
rproject
statistics
1 day ago by
Sole
• 0
3
votes
0
replies
102
views
Herald:
The Biostar Herald for Tuesday, January 21, 2025
herald
1 day ago by
Biostar
3.3k
2
votes
3
replies
167
views
Discover novel transcripts
transcriptomic
assembly
stringtie
stringtie--merge
updated 1 day ago by
lieven.sterck
15k • written 1 day ago by
Emy Alade
• 0
1
vote
2
replies
145
views
Creating pangenome graphs using vcf files?
pangenome
8 hours ago by
Uveyik
▴ 60
0
votes
0
replies
105
views
News:
Computational Pangenomics course
Pangenomics
Pangenome-Graphs
1 day ago by
Physalia-courses
★ 2.6k
2
votes
3
replies
176
views
gene annotation tool recommendations for oomycetes
oomycetes
annotation
updated 19 hours ago by
GenoMax
148k • written 1 day ago by
colindaven
7.0k
19
votes
10
replies
613
views
7 follow
STAR aligner - Is this still maintained?
STAR
aligner
rnaseq
1 day ago by
Joshi
• 0
1
vote
4
replies
644
views
Does anyone know how to transform the following transcript ID's from TCGA isoform data
UCSC
isoform
TCGA
updated 1 day ago by
Zhenyu Zhang
★ 1.2k • written 25 days ago by
B.N.
▴ 10
0
votes
0
replies
88
views
eQTL Analysis for Structural Variants (SV) – Seeking Relevant Software
eQTL
SV
1 day ago by
chiyong4783
• 0
0
votes
1
reply
125
views
SRA fastq modify by 10x valid fastq
fastq
updated 1 day ago by
GenoMax
148k • written 1 day ago by
wyuan37
• 0
0
votes
1
reply
121
views
Building pangenome graphs in minigraph-cactus using vcf?
pangenome
vcf
cactus
updated 1 day ago by
Mark
★ 1.6k • written 1 day ago by
Uveyik
▴ 60
0
votes
2
replies
188
views
RSEM and STAR
STAR
RNASeq
RSEM
1 day ago by
rajdeepboral00
▴ 20
0
votes
0
replies
107
views
Interpretaion of tensorQTL output for ieQTL analysis
TensorQTL
IeQTL
Beta-Values
updated 1 day ago by
Ram
44k • written 1 day ago by
cool.aditya286
• 0
4
votes
10
replies
4.5k
views
6 follow
BLAST Database error: Database memory map file error
makeblastdb
updated 1 day ago by
GenoMax
148k • written 4 months ago by
Martina
• 0
1
vote
4
replies
262
views
How to compare gene prediction
gene-prediction
updated 3 hours ago by
shelkmike
★ 1.4k • written 2 days ago by
Acervo
• 0
0
votes
0
replies
120
views
ArchR extending gene activity till nearest promoter
ArchR
addGeneScoreMat
2 days ago by
Bastien Hervé
6.1k
0
votes
0
replies
127
views
Heritability
greml
heritability
2 days ago by
am29
▴ 50
0
votes
1
reply
164
views
Transcriptome Reconstruction for Transcript Discovery
taco
stringtie
updated 1 day ago by
michael.ante
★ 3.9k • written 2 days ago by
Emy Alade
• 0
2
votes
2
replies
207
views
Having trouble running Desktop version of Pse-in-One
Pse-in-One
DNA
1 day ago by
Jimmy
▴ 30
0
votes
0
replies
124
views
Comparison of different gene catalog abundance
assembly
catalog
metagenome
illumina
gene
2 days ago by
young_bioinformatician
▴ 240
0
votes
1
reply
540
views
Nothing happens when running GATK VCF Validate Variants. Output warning: processed 0 (zero) total variants
GATK
VCF
snp
ValidateVariants
updated 2 days ago by
Pierre Lindenbaum
165k • written 2 days ago by
maikejet
• 0
0
votes
1
reply
210
views
Annotate GWAS result gene function from GFF file
gwas
gff
gff3
annotation
updated 2 days ago by
lieven.sterck
15k • written 3 days ago by
alnus
• 0
0
votes
0
replies
145
views
WGCNA sample-data preprocessing order
gene-expression
wcgna
microarray
network
data-preprocessing
3 days ago by
Reuben
• 0
6
votes
3
replies
1.3k
views
drug sensitivity prediction
deseq2
oncopredict
R
drug
updated 3 days ago by
Luka
• 0 • written 2.2 years ago by
luffy
▴ 130
1
vote
1
reply
210
views
VCFfiltering
VCF
BCFtools
FreeBayes
updated 1 day ago by
Mark
★ 1.6k • written 3 days ago by
Peter
• 0
0
votes
0
replies
193
views
Clumping- cannot mtfrm
clumping
MR
updated 3 days ago by
GenoMax
148k • written 3 days ago by
sp
• 0
0
votes
0
replies
210
views
Analysis and Verification of Mathematical Equations in the Theory of Consciousness
Consciousness
brian
Neuron
neurobiology
updated 4 days ago by
GenoMax
148k • written 4 days ago by
steklolampa
• 0
0
votes
0
replies
210
views
Genetic Trio Phasing with EAGLE2 using hg38
trios
haplotype
phasing
genetics
4 days ago by
heskett
▴ 110
5
votes
3
replies
357
views
b37 liftover
b37
liftover
4 days ago by
spesks
• 0
0
votes
0
replies
201
views
Plugging output files from phyluce phasing workflow into Structure
phyluce
uce
bam
phasing
structure
4 days ago by
gabe.somarriba
• 0
0
votes
0
replies
204
views
gcpp ERROR: [pbbam] read group ERROR: basecaller version is too short:
header
pacbio
bam
basecaller
gcpp
4 days ago by
therosng
• 0
120,151 results • Page
1 of 2404
Recent Votes
ChromHMM - annotation of chromatin states
Comment: Efficiently extract alignments with NH:i:1 field
Comment: Vcf Filtering
Comment: What does diffbind profile plot show exactly?
C: how to find the kingdom for a taxon id using the terminal?
Answer: Does anyone know how to transform the following transcript ID's from TCGA isofor
Answer: Vcf Filtering
Recent Locations •
All
USA,
1 minute ago
Germany,
2 minutes ago
United Kingdom,
2 minutes ago
United States,
4 minutes ago
Brazil,
4 minutes ago
san diego,
9 minutes ago
United States,
10 minutes ago
Recent Awards •
All
Popular Question
to
e.r.zakiev
▴ 230
Popular Question
to
Aspire
▴ 370
Popular Question
to
zizigolu
★ 4.3k
Popular Question
to
meggo
• 0
Popular Question
to
Vinesh
▴ 10
Popular Question
to
Apprentice
▴ 170
Popular Question
to
adarsh_munna
▴ 50
Recent Replies
Comment: Interpreting Varied Survival Times in TCGA-BRCA Data
by
wenbinm
▴ 40
The TCGA barcode has sample type information: https://docs.gdc.cancer.gov/Encyclopedia/pages/TCGA_Barcode/
Comment: ChromHMM - annotation of chromatin states
by
e.r.zakiev
▴ 230
the idea is two-fold: you could either demonstrate some common dynamics across your developmental process, see the image from the paper fr…
Comment: What does diffbind profile plot show exactly?
by
GenoMax
148k
A past thread that may be useful --> https://www.biostars.org/p/9566493/ Also https://content.cruk.cam.ac.uk/bioinformatics/software/DiffB…
Comment: Bionumerics installation files and tutorials after discontinuation
by
GenoMax
148k
It is not clear if this software was commercial or open source (there was a `.com` in the name of the site) but in any case it is clearly d…
Comment: How to compare gene prediction
by
shelkmike
★ 1.4k
I choose an e-value such that it results in a reasonably small number of false matches. If the annotation produced less than 100,000 protei…
Comment: ChromHMM - annotation of chromatin states
by
Bioinformatics_16
▴ 10
could you please guide me how i can use chromHMM output files for 12 states as a input for this tool.
Answer: Vcf Filtering
by
Pierre Lindenbaum
165k
using vcffilterjdk https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ java -jar dist/jvarkit.jar vcffilterjdk -e 'return variant…
Comment: Adding p value above plot
by
ATpoint
86k
I use Inkscape, and usually save plots as pdf or tiff. If using pdf then quality will not decrease because it is vector-based. tiff must be…
Comment: Adding p value above plot
by
marco.barr
▴ 170
Great! each journal will have settings for image quality. For my first few I used the png format and in R you can change the resolution. T…
Answer: How to Clump In Plink?
by
meggo
• 0
Adding to this in case anyone else comes across it: plink --bfile ref_panel \ --clump your_sumstats \ --clump-…
Answer: Adding p value above plot
by
SamGG
▴ 70
Did you have a look at ggsignif? There also other packages with the same goal. https://cran.r-project.org/web/packages/ggsignif/vignette…
Comment: Adding p value above plot
by
a.stef.44
▴ 10
Thank you very much, I used method proposed by marco.barr I it worked very nicely! In addition I would like to ask you as this is my first …
Comment: Adding p value above plot
by
a.stef.44
▴ 10
You are genius!!! Thank you vary much!!!
Comment: Vcf Filtering
by
Marc Ibanez
• 0
Hi, the definition of AF in my header is this one: ##FORMAT=<ID=AF,Number=A,Type=Float,Description="Observed ALT frequencies"> . And …
Comment: How to scale data matrix in Seurat
by
marco.barr
▴ 170
Seurat’s documentation explains what to do for jobs and data that require a lot of memory at this link: [https://satijalab.org/seurat/archi…
Traffic: 4624 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6