Post does not exist.
Limit : all time
all time today this week this month this year
120,982 results • Page 1 of 2420
Sort: Rank
Rank Views Votes Replies
1
vote
1
reply
104
views
News: Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcome!
mmcif
updated 3 hours ago by ▴ 50 • written 1 day ago by • 0
0
votes
0
replies
39
views
News: Course: Introduction to Genome Annotation (Online, 19–22 May 2025)
Gene-Prediction Genome-Annotation Gene-Models
4 hours ago by Physalia-courses ★ 2.6k
0
votes
1
reply
41
views
Error with running cellranger-atac count
cellranger error atac single-cell
updated 10 minutes ago by 150k • written 5 hours ago by • 0
836
votes
167
replies
173k
views
111 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 2 days ago by 3.5k • written 8.4 years ago by 102k
0
votes
0
replies
62
views
HIC-pro with Forward and reverse reads not paired even when I use their test data.
HIC-pro
12 hours ago by Aki ▴ 20
0
votes
1
reply
248
views
Using DEXseq on kallisto tsv outputs ?
alignement DEXseq kallisto
updated 14 hours ago by ★ 7.9k • written 5 days ago by ▴ 10
0
votes
0
replies
83
views
Job: 2025 Arrowhead AI/LLM for Computational Biology and Data Science Internship
intern
updated 17 hours ago by 150k • written 17 hours ago by ★ 9.6k
1
vote
2
replies
451
views
ChIP-seq gene blacklist for Rattus norvegicus
rat blacklist ChIP-seq
updated 17 hours ago by 150k • written 12 months ago by • 0
4
votes
10
replies
762
views
6 follow
Extract length of sample sequence from vcf
microsatellites bcftools vcf indels variants
updated 19 hours ago by ★ 4.2k • written 11 days ago by • 0
0
votes
0
replies
81
views
Tutorial: Fast SCENIC GRN Analysis with RegDiffusion
GRN network scRNA-seq wgcna
21 hours ago by Hao ▴ 10
2
votes
3
replies
516
views
Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
updated 21 hours ago by ▴ 10 • written 2.6 years ago by ▴ 30
1
vote
2
replies
278
views
Blastx issue
Long coding non blastx RNA
updated 21 hours ago by 7.4k • written 3 days ago by • 0
2
votes
7
replies
395
views
TPM vs FPKM divergence at high values
tpm fpkm normalisation
updated 3 hours ago by 87k • written 3 days ago by • 0
3
votes
0
replies
101
views
Herald: The Biostar Herald for Monday, April 14, 2025
herald
22 hours ago by Biostar 3.5k
0
votes
2
replies
238
views
What is the best way to know if a pair of genes is random?
terms genes go
5 hours ago by Ana • 0
1
vote
1
reply
192
views
How to save the AlphaFold PAE plot as an image in ChimeraX using command line ?
PAE ChimeraX AlphaFold
updated 23 hours ago by 4.7k • written 3 days ago by ▴ 680
1
vote
0
replies
80
views
News: LAST CALL - Bioinformatics Pipeline Development with Nextflow - May 19-21, 2025 (online) - Apply Now
nextflow rnaseq workshop
1 day ago by ecSeq Bioinformatics ▴ 20
1
vote
2
replies
201
views
RNA-seq, three comparisons - stick to one linear model, or use separate models?
statistics mixed_effect_model linear_model stats RNAseq
19 hours ago by noodlejackson ▴ 40
0
votes
1
reply
118
views
Using Principal Components may muddle the detecting power of a GWAS?
q-value covariates genomic-inflation pca gwas
updated 1 day ago by ▴ 470 • written 1 day ago by • 0
0
votes
0
replies
95
views
Use Seed or Full Alignments from Pfam HMM as a filter step
hmm sequences metagenomic
1 day ago by Janelyn123 • 0
3
votes
4
replies
256
views
Helicobacter pylori low-rate alignment
bioinformatics transcriptomics RNA-seq
updated 21 hours ago by 150k • written 1 day ago by ▴ 20
14
votes
3
replies
11k
views
Can The Wget Command Be Used To Download Pdbs
pdb
updated 1 day ago by • 0 • written 13.5 years ago by ▴ 310
0
votes
3
replies
277
views
Is a log2 transformation an essential step in preparing expression data for machine learning?
Machinelearning microarray preproccessing
updated 1 day ago by ★ 29k • written 2 days ago by ▴ 60
0
votes
2
replies
866
views
How to re-annotate the structure of gene against a known genomic file
RNA-Seq
updated 1 day ago by ★ 29k • written 5.9 years ago by • 0
0
votes
2
replies
229
views
ONT Live-Basecalling Issue?
ONT minKNOW live-basecalling
updated 7 hours ago by 4.7k • written 2 days ago by • 0
3
votes
4
replies
279
views
Identify gene from sequence at scale in non-model organisms
name sequence gene
updated 1 day ago by ★ 1.5k • written 2 days ago by • 0
0
votes
0
replies
139
views
News: Cellosaurus release 52 is available
database line cell knowledgebase biocuration
2 days ago by Amos Bairoch ▴ 130
0
votes
2
replies
267
views
WGCNA
problem
updated 2 days ago by 150k • written 3 days ago by • 0
0
votes
0
replies
261
views
Seeking Advice on Causal Inference for Treatment Effect Prediction (Small Sample, Genomic Covariates)
inference causal
3 days ago by oghzzang ▴ 50
5
votes
5
replies
444
views
Batch effect
RNAseq Batch-Effect
2 days ago by Fatemeh ▴ 40
0
votes
4
replies
380
views
convert Gene ID to Gene Symbol
gene-id
updated 3 days ago by ▴ 110 • written 5 days ago by • 0
0
votes
1
reply
207
views
News: Structural bioinformatics workshop
Structural bioinformatics
updated 3 days ago by 150k • written 3 days ago by • 0
1
vote
10
replies
564
views
How to test the similarity of two gene expression profiles
test gene sets
updated 3 days ago by ▴ 130 • written 4 days ago by • 0
3
votes
3
replies
242
views
Which are the different kinds of GeneID that exist?
R RNA-Seq
3 days ago by pinheirofabiano ▴ 110
0
votes
0
replies
155
views
Error using DWLS
deconvolution DWLS RNAseq
3 days ago by Ana • 0
0
votes
5
replies
1.7k
views
How to remove this module selection error?
WGCNA
updated 3 days ago by • 0 • written 2.3 years ago by • 0
0
votes
1
reply
943
views
bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider as unmapped reads, reads mapped on both human/mouse references.
bbsplit nextflow
updated 3 days ago by 150k • written 4 days ago by ▴ 590
1
vote
2
replies
231
views
Limma for DEG aalysis
R DEG limma ANALYSIS
3 days ago by rahma.khoualdia • 0
0
votes
0
replies
197
views
deletion impact
vcf
updated 4 days ago by 150k • written 4 days ago by • 0
0
votes
2
replies
253
views
Help finding GTEx v8 file
GTEx SHAPEIT2
3 days ago by 蒲蒲 • 0
2
votes
5
replies
299
views
Idat file processing issue with command line cli
CanineHTS IDAT
3 days ago by 1769mkc ★ 1.2k
0
votes
0
replies
162
views
is there a way to get --ref paths to prioritize my order with vg call?
call vg vgcall
12 hours ago by PolenP • 0
0
votes
1
reply
221
views
Has anyone tried used simple ML models to identify virulence genes?
genetics R classifier genomics machinelearning
updated 4 days ago by ★ 29k • written 4 days ago by • 0
0
votes
4
replies
340
views
What does vg autoindex mpmap do?
vg mpmap autoindex
23 hours ago by Ziyue • 0
5
votes
4
replies
389
views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax alphafold 3
updated 3 days ago by 4.7k • written 4 days ago by ▴ 680
0
votes
0
replies
182
views
filtering genes before or after the correlation?
co-expression feature selection correlation
4 days ago by tyasird ▴ 10
0
votes
16
replies
753
views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram XA compress
updated 3 days ago by ▴ 130 • written 6 days ago by • 0
2
votes
4
replies
305
views
Which additional files are needed for the -taxids option in blast?
decontamination taxids blastn
updated 4 days ago by 150k • written 4 days ago by • 0
0
votes
0
replies
198
views
Job: Assistant, Associate, or Full Project Scientist in Neurobiology
Biology Neuroscience Neurobiology
4 days ago by UCSDBioSci ▴ 30
1
vote
3
replies
315
views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection microarray preprocessing
2 days ago by Sib ▴ 60
120,982 results • Page 1 of 2420
Recent Votes
Comment: Snakemake Global Environment Container
Answer: How to save the AlphaFold PAE plot as an image in ChimeraX using command line ?
A: Bias During Exome Capture For Cnv Analysis
Comment: TPM vs FPKM divergence at high values
What is the difference between GTF AND GFF format
Comment: TPM vs FPKM divergence at high values
The Biostar Herald for Monday, April 14, 2025
Recent Locations • All
Machhagan, 1 minute ago
United Kingdom, 3 minutes ago
Salvador, Bahia, 4 minutes ago
Oviedo, 9 minutes ago
Russia, 11 minutes ago
Turkey, 11 minutes ago
Germany, 15 minutes ago
Recent Awards • All
Popular Question to Jaykumar ▴ 50
Scholar to ATpoint 87k
Popular Question to theodore ▴ 110
Popular Question to Assa Yeroslaviz ★ 1.9k
Popular Question to oghzzang ▴ 50
Popular Question to Shicheng Guo ★ 9.6k
Autobiographer to ecSeq Bioinformatics ▴ 20
Recent Replies
Comment: Error with running cellranger-atac count by GenoMax 150k
> Before processing the fastq files with the count command, I was trimming primer & linker sequences according to a paper I was looking at.…
Comment: TPM vs FPKM divergence at high values by ATpoint 87k
Good catch, that makes sense. As I said above, mathematically I don't see a reason for a non-linear relationship if on normal scale, and I …
Comment: DWLS error Dmat and dvec are incompatible! by Ana • 0
Hi, I am having the same issue. Were you able to solve it? Thanks in advance.
Comment: TPM vs FPKM divergence at high values by dariober 15k
Looking at the range of the data, it seems your input FPKM is very likely on the log scale, i.e. your input is log(FPKM). The TPM data inst…
Answer: Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcom by wojdyr ▴ 50
Parsers work with file syntax, so generally there are no mmCIF parsers for enzymes or for receptor proteins, just parsers for mmCIF files. …
Comment: Snakemake Global Environment Container by meetmet ▴ 10
Many thanks! I completely missed this option. Cheers.
Comment: What is the best way to know if a pair of genes is random? by Ana • 0
Thank you so much
Comment: ONT Live-Basecalling Issue? by LauferVA 4.7k
Yikes. This is scary. I'd definitely contact ONT. No other error messages? Regarding this: > What is the issue here? And is a potential s…
Answer: Using DEXseq on kallisto tsv outputs ? by Gordon Smyth ★ 7.9k
Inputting transcript (RNA isoform) quantifications from kallisto into tools like DEXSeq that are designed for exons is not ideal because th…
Comment: ChIP-seq gene blacklist for Rattus norvegicus by GenoMax 150k
https://kilthub.cmu.edu/articles/dataset/Alternate_gene_annotations_for_rat_macaque_and_marmoset_for_single_cell_RNA_and_ATAC_analyses/2117…
Comment: ChIP-seq gene blacklist for Rattus norvegicus by RD ▴ 20
Were you able to find the list of regions? Thank you!
Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical by cmdcolin ★ 4.2k
doesn't solve your problem exactly but I stumbled on this blog post awhile back https://kalis.louisaslett.com/articles/lct_example.html#re…
Answer: Extract length of sample sequence from vcf by cmdcolin ★ 4.2k
Not sure if it helps but I saw this impressive one-liner in a blog post that 'reconstructs the sequence for the 1000 genomes samples' http…
Comment: RNA-seq, three comparisons - stick to one linear model, or use separate models? by noodlejackson ▴ 40
Thank you @ATpoint
Comment: Is it reasonable to do "Gene Regulatory Network Inference" for each cell type an by Hao ▴ 10
it's a bioarxiv so I didn't provide the link. Anyway, link added and I changed the language.
Traffic: 2294 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6