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Recent Replies
Comment: Problem with Accession Number Changes in UniProt FASTA Sequences
by
GenoMax
150k
> making it hard to match them back to my dataset.
You will need to do some work here. The file I linked above has the mapping for the `A*…
Comment: Identifying primer sequences from raw FASTQ files
by
Chandini
•
0
Thanks a lot for your help, I did limit myself to common primers used in amplicon sequencing and went about it the way you had suggested. I…
Comment: Tool for automatic immune cell annotation in MOUSE?
by
txema.heredia
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210
Thank you,
I've been looking into this and I am honestly baffled.
If I try your code, the ConvertGeneNames uses only those with homologs …
Comment: making psam file for plink2
by
dec986
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380
thank you, that didn't show up on Google searches. Time would've been saved if this error had a helpful error message.
Comment: Problem with Accession Number Changes in UniProt FASTA Sequences
by
bioinfo_enthusiast
•
0
Thank you for your comment. I have explained my problem in another comment. Would you kindly help me with it?
Comment: Problem with Accession Number Changes in UniProt FASTA Sequences
by
bioinfo_enthusiast
•
0
Thank you for your reply.
I need the original (primary) accession numbers because my host-pathogen PPI dataset only uses those IDs (e.g., …
Comment: SlingShot and Subsetting data
by
ATpoint
87k
> dont want to re cluster my data as some cells will definetely move to other clusters if I do clustering again.
Then don't do it? Not su…
Comment: Is TETranscripts useful for repetitive sequences analysis?
by
frarodmar17
•
0
I am looking for all types of repetitive elements in RNA: LTRs, LINEs, SINEs, satellites, microsatellites, etc.
Comment: Is TETranscripts useful for repetitive sequences analysis?
by
GenoMax
150k
> I was analysing repetitive sequences data
Can you clarify what kind of analysis you are looking to do?
Answer: Bulk searching UniProt
by
Elisabeth Gasteiger
★
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If I understand correctly, you have a list of protein names (in a given organism?) and would like to see the corresponding UniProtKB access…
Comment: Problem with Accession Number Changes in UniProt FASTA Sequences
by
Elisabeth Gasteiger
★
2.4k
GenoMax' answer is correct. I would just like to add that the merge and split operations which cause UniProtKB accession numbers to become …
Answer: Problem with Accession Number Changes in UniProt FASTA Sequences
by
GenoMax
150k
Looks like UniProt is using secondary accession numbers starting with `A*` when some of the entries are changed. The two cases where this c…
Comment: How to Close a Phage Genome? Issues with PhageTerm and CheckV Completeness
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GenoMax
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Have you tried to align your contig to available phage genomes (use a subset if you know what phage you are working with)? As long as you a…
Comment: PPI Network Analysis of Virulence Genes in Morganella morganii Using STRING Data
by
bioinfo_enthusiast
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0
Thank you so much!!
Comment: How to perform PPI network analysis in STRING for newly sequenced bacterial geno
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Thank you so much!
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