1 hour ago by
sarahmanderni
▴
130
0
votes
0
replies
25
views
0
votes
0
replies
33
views
2 hours ago by
Physalia-courses
★
2.6k
0
votes
0
replies
43
views
0
votes
0
replies
58
views
0
votes
0
replies
63
views
839
votes
170
replies
179k
views
112 follow
updated 6 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
0
replies
74
views
15 hours ago by
zsc25001
▴
10
1
vote
6
replies
198
views
0
votes
0
replies
80
views
21 hours ago by
Titus
▴
910
0
votes
2
replies
160
views
updated 12 hours ago by
Gordon Smyth
★
8.1k
•
written 23 hours ago by
rajdeepboral00
▴
70
0
votes
0
replies
71
views
1
vote
6
replies
228
views
6 hours ago by
SpliceAndScript
•
0
1
vote
1
reply
136
views
updated 22 hours ago by
GenoMax
151k
•
written 1 day ago by
Arup Ghosh
3.3k
0
votes
2
replies
175
views
7 hours ago by
Peter
•
0
0
votes
0
replies
104
views
2
votes
4
replies
252
views
0
votes
2
replies
188
views
1
vote
2
replies
212
views
4
votes
2
replies
200
views
0
votes
0
replies
127
views
0
votes
0
replies
102
views
0
votes
0
replies
105
views
5
votes
2
replies
208
views
1 day ago by
Mahdi&Christ
▴
20
4
votes
4
replies
310
views
9
votes
9
replies
485
views
0
votes
1
reply
187
views
0
votes
1
reply
673
views
2
votes
10
replies
464
views
updated 1 day ago by
GenoMax
151k
•
written 2 days ago by
anthony.santana.703.j
▴
30
0
votes
0
replies
144
views
2 days ago by
Claire Watson
▴
60
1
vote
6
replies
323
views
4
votes
0
replies
164
views
2
votes
0
replies
147
views
2
votes
0
replies
159
views
2
votes
0
replies
166
views
0
votes
2
replies
201
views
2
votes
7
replies
417
views
updated 2 days ago by
GenoMax
151k
•
written 3 days ago by
ramiro.barrantes
▴
60
1
vote
1
reply
182
views
0
votes
1
reply
178
views
0
votes
1
reply
179
views
1
vote
1
reply
226
views
1
vote
1
reply
214
views
updated 2 days ago by
rfran010
★
1.5k
•
written 3 days ago by
SpliceAndScript
•
0
0
votes
2
replies
216
views
updated 2 days ago by
dthorbur
★
3.0k
•
written 3 days ago by
SpliceAndScript
•
0
1
vote
1
reply
338
views
updated 3 days ago by
colindaven
7.6k
•
written 6 days ago by
emil.paulitz
•
0
0
votes
0
replies
188
views
0
votes
1
reply
228
views
0
votes
0
replies
222
views
0
votes
1
reply
562
views
0
votes
0
replies
229
views
5 days ago by
Physalia-courses
★
2.6k
0
votes
4
replies
2.1k
views
1
vote
0
replies
233
views
Recent Votes
Recent Locations •
All
Bologna, 1 minute ago
Ghent & Brussels, Belgium, 2 minutes ago
Italy, 4 minutes ago
Stockholm, Sweden, 11 minutes ago
Budapest, 16 minutes ago
France, 26 minutes ago
Serbia, 26 minutes ago
Recent Awards •
All
Popular Question to
Morris_Chair
▴
370
Popular Question to
adarsh
▴
60
Popular Question to
Physalia-courses
★
2.6k
Popular Question to
Nicolas Rosewick
11k
Popular Question to
gernophil
▴
130
Popular Question to
TNF_alpha
•
0
Popular Question to
Chirag Parsania
★
2.0k
Recent Replies
Comment: Better splitting of mutliallelic sites then bcftools norm --m-any
by
gernophil
▴
130
Because this question just received an upvote: I used `vt decompose -s` back in the days, but I think bcftools now also makes you choose th…
Comment: Significant reads loss after fastp
by
SpliceAndScript
•
0
I have attached the phred score image of my reads, your opinion will be appreciated.
Comment: Significant reads loss after fastp
by
SpliceAndScript
•
0
I have RNA-seq data and here I am attaching the fastqc report image of ![enter image description here][1]my reads before and after running …
Comment: Data of microarray
by
Peter
•
0
sorry but I do not have input file. If you have can you offer to me?
Comment: How can I find KO IDs for ORF sequences from kofam_scan ?
by
Nikesh
•
0
Thank you, I changed it as #SBATCH --time=1-00:00:00 and it's running. I will keep you updated and thanks again.
Comment: Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
by
aeb
▴
20
Thanks for your input. I read STAR is generally not meant to align to the transcriptome and there would be other more optimized ways to do …
Comment: Best Tool for Fast RNA-Seq Transcriptome Alignment to Extract Unmapped Reads
by
aeb
▴
20
Thanks for your response! I understand the cost difference may not be much... I am considering to compare this approach to just aligning to…
Answer: How can I find KO IDs for ORF sequences from kofam_scan ?
by
Mensur Dlakic
★
29k
Already answered in your other post.
I suggest you inquire about the SLURM time limit and set it to a maximum value allowed. This would …
Comment: How can I find KO IDs for ORF sequences in a large FASTA file?
by
Mensur Dlakic
★
29k
What @genomax said. I suggest you inquire about the SLURM time limit and set it to a maximum value allowed. This would be 6 days:
#SBA…
Comment: How can I find KO IDs for ORF sequences from kofam_scan ?
by
Nikesh
•
0
This is one of sequence;
>k127_52915239_12 # 4220 # 5476 # -1 # ID=1511550_12;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;gc_…
Comment: How can I find KO IDs for ORF sequences from kofam_scan ?
by
GenoMax
151k
Looking at the command line you used and the manual for kofam_scan, multi-threading should be in use. How long are your query sequences?
…
Comment: How can I find KO IDs for ORF sequences from kofam_scan ?
by
Nikesh
•
0
The same error is occurring. I’m wondering if parallel processing is not being utilized during the execution.
Answer: How can I find KO IDs for ORF sequences from kofam_scan ?
by
GenoMax
151k
Please don't post the same content in multiple places.
> I tried changing differenet cpu allocation too.
As I wrote in the other comment…
Comment: How can I find KO IDs for ORF sequences in a large FASTA file?
by
GenoMax
151k
> JOB 10654468 ON c2023 CANCELLED AT 2025-06-10T21:46:45 DUE TO TIME LIMIT *”
You are asking for one minute less than 6 hours in your SLUR…
Comment: How can I find KO IDs for ORF sequences in a large FASTA file?
by
Nikesh
•
0
@mensur
Hi,
I set up the environment in HCC, and my FASTA file contains 98 sequences. This is my SLURM script, but I’ve tried running it …
Traffic: 3246 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6