updated 2 hours ago by
Jordan M Eizenga
▴
690
•
written 14 hours ago by
elcortegano
▴
210
0
votes
1
reply
61
views
0
votes
1
reply
116
views
0
votes
0
replies
29
views
0
votes
2
replies
167
views
0
votes
0
replies
56
views
836
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
0
replies
122
views
0
votes
0
replies
72
views
0
votes
3
replies
132
views
0
votes
1
reply
76
views
0
votes
0
replies
77
views
17 hours ago by
frarodmar17
•
0
0
votes
2
replies
1.3k
views
updated 18 hours ago by
aboozar.soorni
▴
30
•
written 4.6 years ago by
puipui
•
0
1
vote
1
reply
94
views
6
votes
9
replies
2.9k
views
0
votes
1
reply
92
views
updated 18 hours ago by
ATpoint
87k
•
written 19 hours ago by
dreamer247
•
0
0
votes
0
replies
96
views
0
votes
4
replies
678
views
updated 15 hours ago by
Arup Ghosh
3.3k
•
written 12 months ago by
Yixuan
•
0
1
vote
1
reply
135
views
12
votes
16
replies
18k
views
8 follow
updated 1 day ago by
ngelbal
•
0
•
written 7.5 years ago by
alec_djinn
▴
390
0
votes
6
replies
242
views
1
vote
5
replies
203
views
9 hours ago by
samuel.a.odonnell
▴
590
2
votes
4
replies
420
views
updated 1 day ago by
Brian Bushnell
20k
•
written 7 days ago by
bge
•
0
0
votes
3
replies
210
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 1 day ago by
Gio
•
0
0
votes
5
replies
217
views
0
votes
1
reply
129
views
4
votes
9
replies
348
views
0
votes
0
replies
83
views
6
votes
11
replies
737
views
1 day ago by
alexandrakortsi
•
0
0
votes
0
replies
109
views
1 day ago by
alwayshope
▴
40
0
votes
1
reply
148
views
updated 1 day ago by
ATpoint
87k
•
written 1 day ago by
pinheirofabiano
▴
100
1
vote
1
reply
373
views
updated 1 day ago by
Alexander Blume
▴
10
•
written 7 months ago by
CTLong
▴
140
0
votes
0
replies
97
views
0
votes
0
replies
97
views
0
votes
0
replies
114
views
0
votes
1
reply
178
views
0
votes
7
replies
439
views
1 day ago by
himanshu0102
•
0
1
vote
2
replies
220
views
21 hours ago by
bioinfo1990
▴
10
0
votes
0
replies
127
views
updated 1 day ago by
Ram
45k
•
written 2 days ago by
Physalia-courses
★
2.6k
2
votes
2
replies
265
views
0
votes
1
reply
530
views
1
vote
1
reply
328
views
updated 4 days ago by
Gordon Smyth
★
7.9k
•
written 4 days ago by
Apprentice
▴
170
1
vote
1
reply
371
views
4
votes
6
replies
554
views
1
vote
2
replies
303
views
4
votes
7
replies
543
views
updated 15 hours ago by
Istvan Albert
102k
•
written 4 days ago by
jahnreinhard.ringger
•
0
4
votes
15
replies
732
views
updated 11 hours ago by
Phil Ewels
★
1.4k
•
written 4 days ago by
AIMAR
•
0
4
votes
3
replies
352
views
updated 1 day ago by
Yugan Gogul Muthukumar
▴
10
•
written 4 days ago by
jpeduprep
•
0
0
votes
0
replies
199
views
4 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
294
views
updated 1 day ago by
Ram
45k
•
written 4 days ago by
Assa Yeroslaviz
★
1.9k
8
votes
4
replies
525
views
Recent Votes
Recent Locations •
All
Bologna, 3 minutes ago
Turkey/Ankara/Intergen, 23 minutes ago
Machhagan, 35 minutes ago
United States, 57 minutes ago
China, 1 hour ago
Australia, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
kalavattam
▴
330
Popular Question to
bioinfo
▴
150
Popular Question to
ATRX
★
1.2k
Popular Question to
priya.bmg
▴
60
Popular Question to
elcortegano
▴
210
Popular Question to
zizigolu
★
4.3k
Recent Replies
Answer: Annotate GFA with coverage depth
by
Jordan M Eizenga
▴
690
You can annotate Bandage visualizations using a CSV with a certain structure, so you can process the `vg depth` TSV into Bandage's expected…
Answer: Query coverage high, E-value low, and identity low - Blastp results interpretati
by
Mensur Dlakic
★
29k
Either you are not clear what homologous sequences mean, or you are using some internal definition that makes sense to you. Let's pick an `…
Answer: Methods for directional pathway analysis of DEGs?
by
Gordon Smyth
★
7.9k
limma provides a suite of directional pathway analysis functions that are integrated with its DE procedures. They are based on competitive …
Comment: Discrepancy between positions on IGV and NCBI's PrimerBLAST
by
GenoMax
150k
> It showed me the same positions as that of PrimerBLAST.
So we know that result is correct.
You made the BED file manually? It is in cor…
Comment: MultiQC_report
by
Phil Ewels
★
1.4k
Thanks for spotting! As mentioned below, it's samples * top adapters. I've made an issue here: https://github.com/MultiQC/MultiQC/issues/31…
Comment: MultiQC_report
by
Phil Ewels
★
1.4k
This is exactly the case. Surprising that no-one else has brought this up in 10 years!
I've created an issue here to fix it: https://gith…
Comment: Poor alignment rates using Bowtie
by
GenoMax
150k
Quick representative check with a random Illumina dataset (50 bp, 200K reads from it).
Bowtie v.1.3.1 and `mature.fa` downloaded from miR…
Comment: Why does Radian run so much slower than vanilla R?
by
Istvan Albert
102k
I would recommend asking this on the radian GitHub discussion page.
Comment: Poor alignment rates using Bowtie
by
Istvan Albert
102k
That being said, I'd like to hear whether the Us in the reference made any difference. It is conceivable that Bowtie 1 treats U as a T.
L…
Comment: C.reinhardtii single-cell Seurat object - gene names instead of loci
by
GenoMax
150k
> BD Rhapsody protocols
That is important to know. Perhaps the issue is with the way you converted the GFF3 to GTF. What software did you …
Comment: C.reinhardtii single-cell Seurat object - gene names instead of loci
by
Ana
•
0
Thank you for your answer!
Unfortunalety, NCBI doesn't have the latest version of the genome and annotations for this organism (v6.1), so I…
Comment: Has anybody worked with C.reinhardtii single-cell before and could help me get t
by
GenoMax
150k
It is always safer to get sequence/annotations from standard sources like NCBI/Ensembl so no manipulations are required to make the data wo…
Comment: Poor alignment rates using Bowtie
by
GenoMax
150k
Looking at the size distribution the data must already be pre-trimmed so it does not make sense to trim again. You should merge data from t…
Answer: MultiQC_report
by
Basti
★
2.0k
I think it just counts the total number of lines while there could be multiple adapters types per sample (ex : illumina_universal_adapter, …
Traffic: 1492 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6