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yes, you can try [this][1]
[1]: https://stuartlab.org/signac/reference/callpeaks
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Naive question So that is the only information I would need for mac2 input?
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What species are you working on and which cell types are you interesting in ?
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You can call peaks again from the fragments file using Macs2 like they did in the paper. Then you can add your `peaks x cells` matrix as a …
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Thanks.
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