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Recent Replies
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[**FastANI**][1] will calculate average nucleotide identity for whole genomic sequences. [**FastAAI**][2] will do the same for whole proteo…
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If I understand correctly, you want to do downsampling. You can do it, for example, with "seqkit sample" (https://bioinf.shenwei.me/seqkit/…
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This is the link of the plot (see **figure K**) ; [https://www.nature.com/articles/s41590-024-01994-8/figures/14][1]
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As mentioned, 50% wouldn't be that crazy for something unusual.
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Comment: prokka with too many "hypothetical proteins" and genome comparison
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I'm working with everything I have, to be honest. I will work with aa sequences and try MMseq2.
Thank you so much for the help!
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Hi! Did you find it? I am struggling with gene expression meta-analysis, but don't know how to strat the analysis. Do you have any material…
Comment: prokka with too many "hypothetical proteins" and genome comparison
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Are you working with nucleotide sequences or amino acid sequences? It's best to perform all these kinds of sequence comparisons with the la…
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Thank you so much for your help.
I don't know how usual is to have 50% of hypotetical proteins. If I have to give you a number they are aro…
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What is the organism? 50% hypothetical isn't that crazy to me if its something a bit unusual. I spent my PhD working on a gene cluster wher…
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