0
votes
0
replies
15
views
0
votes
0
replies
8
views
0
votes
13
replies
258
views
0
votes
0
replies
38
views
6 hours ago by
Physalia-courses
★
2.6k
0
votes
1
reply
53
views
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
0
replies
47
views
0
votes
0
replies
48
views
0
votes
4
replies
182
views
1
vote
0
replies
133
views
0
votes
0
replies
108
views
1
vote
3
replies
619
views
updated 8 hours ago by
GenoMax
150k
•
written 1 day ago by
Wu-Sheng Zhang
•
0
0
votes
2
replies
208
views
0
votes
0
replies
136
views
updated 2 days ago by
Pierre Lindenbaum
165k
•
written 2 days ago by
swarnadurga66666m
•
0
0
votes
1
reply
160
views
updated 2 days ago by
GenoMax
150k
•
written 2 days ago by
Yongjie Zhang
▴
110
0
votes
1
reply
168
views
updated 2 days ago by
Mensur Dlakic
★
29k
•
written 2 days ago by
Yongjie Zhang
▴
110
2
votes
3
replies
2.3k
views
updated 2 days ago by
Dan A
•
0
•
written 3.7 years ago by
Agenor Neto
▴
10
1
vote
1
reply
189
views
0
votes
0
replies
126
views
0
votes
2
replies
248
views
updated 3 days ago by
Istvan Albert
102k
•
written 3 days ago by
louis-gil
•
0
2
votes
1
reply
378
views
0
votes
1
reply
459
views
3
votes
3
replies
309
views
0
votes
3
replies
1.5k
views
updated 3 days ago by
Bastien Hervé
6.2k
•
written 22 months ago by
Sun
•
0
0
votes
1
reply
211
views
0
votes
2
replies
765
views
3
votes
4
replies
3.2k
views
8
votes
3
replies
335
views
1
vote
1
reply
214
views
updated 4 days ago by
Ram
45k
•
written 4 days ago by
reddyraghuveer664
•
0
0
votes
0
replies
175
views
0
votes
1
reply
216
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
Placeholder@12654926
•
0
0
votes
1
reply
242
views
1
vote
1
reply
253
views
3
votes
2
replies
296
views
0
votes
0
replies
184
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
laurasachica7
•
0
0
votes
4
replies
3.2k
views
updated 5 days ago by
Ram
45k
•
written 8.3 years ago by
roz_safavi
•
0
3
votes
6
replies
447
views
1
vote
0
replies
285
views
updated 5 days ago by
GenoMax
150k
•
written 5 days ago by
ilaria.palmisano
▴
10
3
votes
4
replies
359
views
1
vote
4
replies
429
views
5 days ago by
Basti
★
2.0k
0
votes
1
reply
249
views
0
votes
5
replies
475
views
0
votes
0
replies
199
views
0
votes
0
replies
236
views
updated 4 days ago by
Ram
45k
•
written 5 days ago by
Genomancer
•
0
2
votes
3
replies
341
views
0
votes
8
replies
3.0k
views
6 follow
1
vote
2
replies
611
views
1
vote
6
replies
491
views
updated 4 days ago by
andres.firrincieli
3.9k
•
written 6 days ago by
shevch2009
•
0
0
votes
2
replies
308
views
0
votes
5
replies
425
views
updated 5 days ago by
Michael
55k
•
written 6 days ago by
frarodmar17
•
0
Recent Votes
Recent Locations •
All
The Netherlands, just now
United Kingdom, 3 minutes ago
United States, 11 minutes ago
Russia, 13 minutes ago
United States, 14 minutes ago
France, 28 minutes ago
United States, 35 minutes ago
Recent Awards •
All
Popular Question to
ZuelTech
•
0
Popular Question to
dwpeng
▴
120
Popular Question to
henry slade
▴
80
Popular Question to
gernophil
▴
120
Popular Question to
Mohita
▴
50
Popular Question to
Yongjie Zhang
▴
110
Recent Replies
Comment: Good QC Package (RSeQC or alternative) for Salmon mapping/quantification results
by
squidqid
•
0
MultiQC is very helpful. From my understanding, however, MultiQC will not parse the information from useful auxiliary outputs like .../aux_…
Comment: Remove batch effect RnaSeq (RUVg)
by
ATpoint
87k
It is generally expected in communities like this that you read the manual first which covers this https://bioconductor.org/packages/releas…
Comment: Good QC Package (RSeQC or alternative) for Salmon mapping/quantification results
by
GenoMax
150k
If you are using single cell data then you really should be using `alevin-fry/simpleaf` packages ([**LINK**][1]) instead of `salmon`. There…
Comment: Depth in Cram file does not match depth in VCF file
by
Jeremy Leipzig
23k
can you show us that line in the VCF:
`cat PC_1-7.wf_snp_clinvar.vcf | grep 69078931`
Comment: Lacking exons in gtf file of a virus' genome
by
GenoMax
150k
Since the host is always going to be there you can do the mapping to a combined three transcriptome pool, as a test/first-pass. That will g…
Comment: Good QC Package (RSeQC or alternative) for Salmon mapping/quantification results
by
squidqid
•
0
Did you ever get an answer to this question?
Comment: Lacking exons in gtf file of a virus' genome
by
ZuelTech
•
0
I mean, can I map all lists of the libraries ( HAZV-infected, LGTV-infected, uninfected) to the HAZV genome? Can I also map them to the LGT…
Comment: Lacking exons in gtf file of a virus' genome
by
GenoMax
150k
> Then, I want to map the libraries to each of the virus genome. Is this possible?
Possible but will that be logical. If you have all thr…
Comment: Lacking exons in gtf file of a virus' genome
by
ZuelTech
•
0
Thank you! Btw, going back to mapping, I’m working with a vector infected with HAZV and LGTV virus. I have libraries with the host infected…
Comment: Lacking exons in gtf file of a virus' genome
by
Michael
55k
Yes, that you can do as well. Then you don't need to use STAR. But I would add the host transcriptome as a decoy there.
Comment: Lacking exons in gtf file of a virus' genome
by
ZuelTech
•
0
I see, thank you so much! I’ll try this method. Can I also use Salmon in quantification?
Comment: Lacking exons in gtf file of a virus' genome
by
Michael
55k
> Does it mean I don’t need to put a gtf file when I do mapping to HAZV
> genome?
Indeed, unless you want to generate the count file in ST…
Comment: Lacking exons in gtf file of a virus' genome
by
ZuelTech
•
0
Thank you! I’m new to bioinformatics, particularly on working with virus. What can you recommend on what to do with mapping with the reads …
Comment: Lacking exons in gtf file of a virus' genome
by
ZuelTech
•
0
Thank you. But I think the one you provided is from Refseq (as evident from the file name “GCF…”, mine I used the genome from GenBank with …
Traffic: 2229 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6