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No that was only from Breast. You could try selecting all data and see if you are able to see all treatments in the set.
No idea about ho…
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I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as you …
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> Can you try lowering the k to k=9?
Wouldn't that mess with the results since all my kmers are 20bp?
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> Else, I will happy to send over the data and kindly perform the analysis for me.
This website is meant to provide advice, not service. I…
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Thank you! Naive question, but does that list include all treatments in TCGA? I.e. is there anything missing from there, or that's it?
Als…
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Interesting! Thank you for such a quick response!
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I also have similar question. I sliced the genomic bed file with 50kb windows and 1kb padding into ~700 bed files; each bed file contains 9…
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See answer here: https://www.biostars.org/p/9494503/#9494619
Heng Li said: https://twitter.com/lh3lh3/status/1410375781340135424
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Can you try lowering the `k` to `k=9`?
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This topic is almost 5 years old, but I am facing the same (or at least a very similar) issue.
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