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1,000 results • Page
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Votes
Replies
5
votes
4
replies
346
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
1 day ago by
Estevão
• 0
0
votes
0
replies
173
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
10 days ago by
yxwucq
• 0
4
votes
2
replies
317
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 17 days ago by
Ram
43k • written 17 days ago by
Adi
▴ 10
7
votes
7
replies
1.5k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 18 days ago by
Dunois
★ 2.5k • written 18 days ago by
AdviceSeeker
• 0
1
vote
2
replies
360
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
16 days ago by
Javier
• 0
16
votes
10
replies
1.1k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 5 weeks ago by
Madelaine Gogol
5.3k • written 5 weeks ago by
Ann
★ 2.4k
1
vote
1
reply
226
views
Forum:
Can I use this community for software development?
software-development
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
avpuzanov
• 0
5
votes
2
replies
392
views
Forum:
Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 5 weeks ago by
Michael
54k • written 5 weeks ago by
avpuzanov
• 0
0
votes
0
replies
179
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 6 weeks ago by
Ram
43k • written 6 weeks ago by
Mohammed
• 0
1
vote
3
replies
486
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
7 weeks ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
716
views
Forum:
Bioinformatics career transition
career
forum
updated 7 weeks ago by
jared.andrews07
★ 16k • written 7 weeks ago by
jevill17
▴ 20
4
votes
2
replies
492
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
7 weeks ago by
Anatoly A.
▴ 10
6
votes
6
replies
782
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
8 weeks ago by
jared.andrews07
★ 16k
0
votes
0
replies
168
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
396
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
8 weeks ago by
Dave Carlson
★ 1.7k
31
votes
12
replies
1.0k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
9 weeks ago by
karlaarz
▴ 90
5
votes
4
replies
570
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 10 weeks ago by
GenoMax
142k • written 10 weeks ago by
Mango
▴ 10
1
vote
2
replies
378
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 10 weeks ago by
ATpoint
82k • written 10 weeks ago by
ashaneev07
▴ 20
8
votes
7
replies
821
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 10 weeks ago by
emmanouil.a
▴ 120 • written 3 months ago by
harasharan
• 0
1
vote
0
replies
284
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 10 weeks ago by
Pierre Lindenbaum
161k • written 10 weeks ago by
Bogdan
★ 1.4k
4
votes
2
replies
384
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 12 weeks ago by
dsull
★ 6.0k • written 12 weeks ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.8k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
0
votes
0
replies
207
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 3 months ago by
Ram
43k • written 3 months ago by
Akos
▴ 20
2
votes
3
replies
439
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
3 months ago by
Ajay A Shettigar
• 0
17
votes
11
replies
1.0k
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.2k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
26
votes
27
replies
2.1k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 3 months ago by
dsull
★ 6.0k • written 3 months ago by
Rozita
▴ 40
7
votes
6
replies
742
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 3 months ago by
Ram
43k • written 3 months ago by
Petur
▴ 20
21
votes
12
replies
3.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
2
votes
1
reply
437
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
3 months ago by
LauferVA
4.2k
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
4
votes
3
replies
781
views
Forum:
How to get started in bioinformatics
students
updated 3 months ago by
Ram
43k • written 4 months ago by
Soidihane
▴ 10
2
votes
2
replies
587
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 4 months ago by
Ram
43k • written 4 months ago by
cwwong13
▴ 40
0
votes
2
replies
3.2k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 4 months ago by
GenoMax
142k • written 4 months ago by
Mango
▴ 10
5
votes
3
replies
619
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
Konstantin
▴ 20
6
votes
2
replies
670
views
Forum:
how to start Bioinformatics?
basics
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.1k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
4 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
933
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by
Ram
43k • written 5 months ago by
Daniel
• 0
1
vote
1
reply
494
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 5 months ago by
Ram
43k • written 5 months ago by
Afeef
• 0
3
votes
5
replies
1.0k
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by
Ram
43k • written 5 months ago by
Paulo
• 0
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by
Istvan Albert
100k
3
votes
2
replies
627
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 5 months ago by
fturner
▴ 10 • written 5 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
375
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 6 months ago by
Ram
43k • written 6 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
0
votes
0
replies
464
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
6 months ago by
ishwarvh
• 0
0
votes
0
replies
358
views
Forum:
Automated Checks And QA
retrospective
6 months ago by
Sasha
▴ 840
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 7 months ago by
kieran
▴ 10
21
votes
7
replies
11k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
1,000 results • Page
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Recent Votes
Answer: Does comparing two different groups to a common third group introduce bias in th
Comment: High Malat-1 expression in single cell data
Comment: High Malat-1 expression in single cell data
Print Differentially Expressed Exons From Dexseq Results
C: Print Differentially Expressed Exons From Dexseq Results
C: Print Differentially Expressed Exons From Dexseq Results
Answer: Please Explain Window Size and Step Size
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Popular Question
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curious
▴ 750
Popular Question
to
M.
▴ 30
Student
to
carolofharvest
▴ 30
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e.r.zakiev
▴ 210
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★ 6.0k
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eebloom
▴ 80
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▴ 80
Recent Replies
Comment: Easy way to find out which allele is minor allele from bed file?
by
bk11
★ 2.4k
In the case of MAF = 0.5, I think A1 is still the minor allele. You can check the discussion in this [link][1]. [1]: https://groups.goo…
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴ 750
Yes, but I think the problem is what to do when MAF = 0.5
Answer: Easy way to find out which allele is minor allele from bed file?
by
bk11
★ 2.4k
In Plink, A1 is usually a minor allele and A2 a major allele. .frq (basic allele frequency report) Produced by --freq. …
Comment: Raw counts using stringtie
by
GenoMax
142k
> Error parsing strand from GFF line Looking at this error and the listing of files in your directory it looks like you need to `gunzip` t…
Comment: High Malat-1 expression in single cell data
by
dsull
★ 6.0k
I briefly looked at those genes on a genome browser -- there are a lot of repeat elements in those genes, meaning a lot of counts assigned …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
Thank you for sharing. What are your thoughts on the genes Gm42418, AY036118, and Gm26917? Some articles suggest that clusters with an abu…
Comment: Do I need to go back and filter my long-reads?
by
GenoMax
142k
> I think I will filter the reads ultimately. If your data was not run and basecalled using the same exact version of pore/software for a…
Comment: Raw counts using stringtie
by
Ram
43k
What is `stringie.sh`? Try `./stringtie.sh -h` and then `more stringtie.sh`.
Comment: Do I need to go back and filter my long-reads?
by
Ram
43k
> I think you should have the right to delete a question you yourself have submitted If you were to talk to someone, can you make them for…
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
by
dthorbur
★ 1.9k
I don't have any experience using `BRAKER2` so I cannot comment, but I would be extra careful about data you find on non-model organisms. T…
Comment: Differential Expression Analysis using DESeq2 in R
by
GenoMax
142k
You can copy and paste your code and then use `101010` button in the edit window to format it as text to keep it monospaced. For example …
Comment: Same sequencing sample in multiple lanes. How to analyse it?
by
ST
• 0
I guess this could really depend on the "counting" strategy, the library complexity and possible lane biases. If e.g., EM is used to guide…
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
by
Vijith
▴ 30
Hi dthorbur, thanks for the response. I have run Augustus using Arabidopsis as a species. I would like to know about the suitability of usi…
Comment: How does gene length effect the number of reads mapped
by
dsull
★ 6.0k
Alicia Oshlack has done some cool work on this but even the plots in her papers show that TPMs sometimes overcorrect and the relationship i…
Comment: Differential Expression Analysis using DESeq2 in R
by
Erina
• 0
![The below image contains the code and result also.][1] [1]: /media/images/96562b96-d508-4f67-96d1-7c71aa17
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