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126 results • Page
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Herald:
The Biostar Herald for Monday, May 13, 2024
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The Biostar Herald for Tuesday, April 23, 2024
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Biostar
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The Biostar Herald for Monday, April 15, 2024
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The Biostar Herald for Tuesday, December 19, 2023
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The Biostar Herald for Monday, December 11, 2023
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The Biostar Herald for Monday, October 16, 2023
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The Biostar Herald for Monday, October 09, 2023
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The Biostar Herald for Tuesday, September 26, 2023
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The Biostar Herald for Monday, August 28, 2023
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▴ 770 • written 8 months ago by
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The Biostar Herald for Thursday, August 24, 2023
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The Biostar Herald for Wednesday, August 09, 2023
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The Biostar Herald for Wednesday, August 02, 2023
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The Biostar Herald for Thursday, June 15, 2023
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The Biostar Herald for Monday, June 05, 2023
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11 months ago by
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The Biostar Herald for Tuesday, May 23, 2023
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12 months ago by
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844
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The Biostar Herald for Thursday, May 11, 2023
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Biostar
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Herald:
The Biostar Herald for Monday, May 01, 2023
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updated 12 months ago by
cmdcolin
★ 3.8k • written 12 months ago by
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The Biostar Herald for Monday, April 24, 2023
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The Biostar Herald for Monday, April 17, 2023
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The Biostar Herald for Monday, April 10, 2023
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Biostar
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The Biostar Herald for Monday, April 03, 2023
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The Biostar Herald for Tuesday, March 28, 2023
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The Biostar Herald for Monday, March 13, 2023
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14 months ago by
Biostar
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674
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The Biostar Herald for Tuesday, February 28, 2023
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Biostar
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The Biostar Herald for Monday, February 20, 2023
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730
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The Biostar Herald for Wednesday, February 15, 2023
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The Biostar Herald for Monday, February 06, 2023
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The Biostar Herald for Monday, January 30, 2023
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126 results • Page
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Recent Votes
plotting trees in R: node labels from nexus tree files
Interpreting the Jackstraw plot of Seurat
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
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scideas
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Recent Replies
Answer: Design for complex RNA-Seq experiment using Deseq2
by
Ezequiel
• 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot
by
marco.barr
▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
ATpoint
82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why?
by
scideas
▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data
by
Muhammad
• 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
nguyenn6
• 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
by
anton.i.petrov
• 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
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