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Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
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Comment: Truncated Bam Error
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guanghao
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I also have this problem, but it doesn't work even I remove the Xms32g. The result bam is still malformed.
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Hey, I believe they are mapped to hg19 and this is potentially a bigger problem than people realise, I nearly made this mistake and I would…
Comment: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
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brandon
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This worked beautifully using 'requests.get()' in python, thank you so much!
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first get the main ID in stringdb: $ wget -qO - "https://string-db.org/api/tsv-no-header/get_string_ids?identifiers=RPS4Y1&species=960…
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Are you sure you've loaded the library properly? Have you checked if edgeR is ticked in the list of installed packages? Double-check it. If…
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if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
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To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
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God bless you man.
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Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
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thank you, I'll look at these files/documents. .
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I was given a solution by a colleague -- it seems a little hacky, but worked really well! > one way to get this to work is to use --clu…
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Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
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Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
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