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Comment: Comment: How to add GFP in STAR reference?
12 days ago by bioinfo ▴ 160
1
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4
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410
views
How to add GFP in STAR reference?
STAR
updated 12 days ago by 152k • written 12 days ago by ▴ 160
0
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3
replies
610
views
Random seed in scanpy
scanpy scRNAseq single-cell
updated 13 days ago by 88k • written 19 days ago by ▴ 160
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0
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610
views
Comment: Comment: Random seed in scanpy
15 days ago by bioinfo ▴ 160
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0
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517
views
Comment: Comment: DESeq2 outliers-should I be concerned?
29 days ago by bioinfo ▴ 160
4
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2
replies
517
views
DESeq2 outliers-should I be concerned?
deseq2
updated 29 days ago by 88k • written 4 weeks ago by ▴ 160
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0
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464
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Comment: Comment: Kallisto to tximport to deseq2
5 weeks ago by bioinfo ▴ 160
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2
replies
464
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Kallisto to tximport to deseq2
enseml deseq2 Kallisto
updated 5 weeks ago by 152k • written 5 weeks ago by ▴ 160
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0
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445
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Comment: Comment: Question about assigning gene names, tximport and DESeq2
9 weeks ago by bioinfo ▴ 160
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2
replies
445
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Question about assigning gene names, tximport and DESeq2
tximport deseq2
9 weeks ago by bioinfo ▴ 160
1
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3
replies
2.1k
views
How to use harmony with scanpy?
scanpy harmony
updated 3 months ago by • 0 • written 4 months ago by ▴ 160
2
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2
replies
679
views
Should I not have any adapters after trimming?
RNA-seq
updated 4 months ago by 15k • written 4 months ago by ▴ 160
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0
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2.1k
views
Comment: Comment: How to use harmony with scanpy?
4 months ago by bioinfo ▴ 160
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0
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396
views
Does the order of HTOs matter?
hashsolo scanpy
5 months ago by bioinfo ▴ 160
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0
replies
372
views
Regression and scaling in scanpy
scanpy
6 months ago by bioinfo ▴ 160
0
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0
replies
924
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
8 months ago by bioinfo ▴ 160
0
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1
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937
views
When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 10 months ago by 5.0k • written 10 months ago by ▴ 160
2
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1
reply
643
views
How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 10 months ago by 5.0k • written 10 months ago by ▴ 160
0
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0
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390
views
How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
11 months ago by bioinfo ▴ 160
2
votes
1
reply
659
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 11 months ago by ▴ 940 • written 11 months ago by ▴ 160
0
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0
replies
663
views
Comment: Comment: How can I import an unindexed human gtf file in IGV?
11 months ago by bioinfo ▴ 160
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2
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663
views
How can I import an unindexed human gtf file in IGV?
igv
11 months ago by bioinfo ▴ 160
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0
replies
1.2k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
12 months ago by bioinfo ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
12 months ago by bioinfo ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
12 months ago by bioinfo ▴ 160
0
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6
replies
1.2k
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
12 months ago by bioinfo ▴ 160
0
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1
reply
865
views
Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
13 months ago by bioinfo ▴ 160
1
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3
replies
865
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 13 months ago by 152k • written 13 months ago by ▴ 160
0
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0
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924
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
13 months ago by bioinfo ▴ 160
2
votes
3
replies
924
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
8 months ago by bioinfo ▴ 160
0
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1
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1.9k
views
Comment: Comment: How should I make kallisto indexes?
13 months ago by bioinfo ▴ 160
1
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5
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1.9k
views
How should I make kallisto indexes?
kallisto
updated 13 months ago by ★ 7.6k • written 14 months ago by ▴ 160
0
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0
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794
views
Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
14 months ago by bioinfo ▴ 160
0
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0
replies
964
views
Comment: Comment: How to row normalize a matrixplot?
14 months ago by bioinfo ▴ 160
1
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2
replies
794
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
14 months ago by bioinfo ▴ 160
2
votes
2
replies
964
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
14 months ago by bioinfo ▴ 160
0
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1
reply
1.3k
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 14 months ago by 45k • written 14 months ago by ▴ 160
0
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0
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1.1k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
14 months ago by bioinfo ▴ 160
0
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1
reply
1.1k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
14 months ago by bioinfo ▴ 160
0
votes
5
replies
1.1k
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 14 months ago by 45k • written 14 months ago by ▴ 160
0
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1
reply
1.5k
views
Comment: Comment: How does kallisto handle multi mapped reads?
16 months ago by bioinfo ▴ 160
0
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1
reply
1.5k
views
Comment: Comment: How does kallisto handle multi mapped reads?
16 months ago by bioinfo ▴ 160
3
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7
replies
1.5k
views
How does kallisto handle multi mapped reads?
kallisto
updated 16 months ago by ★ 7.6k • written 16 months ago by ▴ 160
0
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2
replies
1.1k
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 14 months ago by • 0 • written 16 months ago by ▴ 160
0
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0
replies
656
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
18 months ago by bioinfo ▴ 160
4
votes
2
replies
1.3k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 19 months ago by 21k • written 19 months ago by ▴ 160
0
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1
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1.9k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
19 months ago by bioinfo ▴ 160
0
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1
reply
1.9k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
19 months ago by bioinfo ▴ 160
0
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1
reply
1.9k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
19 months ago by bioinfo ▴ 160
3
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7
replies
1.9k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 14 months ago by 45k • written 19 months ago by ▴ 160
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