Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
222
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
23 hours ago by bioinfo ▴ 150
1
vote
2
replies
222
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
23 hours ago by bioinfo ▴ 150
0
votes
1
reply
490
views
Comment: Comment: How should I make kallisto indexes?
17 days ago by bioinfo ▴ 150
1
vote
5
replies
490
views
How should I make kallisto indexes?
kallisto
updated 17 days ago by ★ 6.0k • written 4 weeks ago by ▴ 150
0
votes
0
replies
316
views
Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
4 weeks ago by bioinfo ▴ 150
0
votes
0
replies
318
views
Comment: Comment: How to row normalize a matrixplot?
4 weeks ago by bioinfo ▴ 150
1
vote
2
replies
316
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
4 weeks ago by bioinfo ▴ 150
2
votes
2
replies
318
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
4 weeks ago by bioinfo ▴ 150
0
votes
1
reply
243
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 150
0
votes
0
replies
326
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
0
votes
1
reply
326
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
0
votes
5
replies
326
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 150
0
votes
1
reply
543
views
Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by bioinfo ▴ 150
0
votes
1
reply
543
views
Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by bioinfo ▴ 150
3
votes
7
replies
543
views
How does kallisto handle multi mapped reads?
kallisto
updated 12 weeks ago by ★ 6.0k • written 12 weeks ago by ▴ 150
0
votes
2
replies
400
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 29 days ago by • 0 • written 12 weeks ago by ▴ 150
0
votes
0
replies
295
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
5 months ago by bioinfo ▴ 150
4
votes
2
replies
647
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 6 months ago by 19k • written 6 months ago by ▴ 150
0
votes
1
reply
1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
0
votes
1
reply
1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
0
votes
1
reply
1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
3
votes
7
replies
1.0k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
0
votes
0
replies
700
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
0
votes
1
reply
700
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
0
votes
1
reply
700
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
3
votes
4
replies
700
views
Why am I getting different results with kallisto?
kallisto
6 months ago by bioinfo ▴ 150
0
votes
1
reply
502
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
6 months ago by bioinfo ▴ 150
2
votes
3
replies
502
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 6 months ago by 142k • written 6 months ago by ▴ 150
0
votes
0
replies
349
views
How to convert dataframe properly to anndata?
single-cell python anndata
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
0
votes
0
replies
343
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
0
votes
0
replies
320
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 6 weeks ago by 43k • written 6 months ago by ▴ 150
0
votes
0
replies
720
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
0
votes
1
reply
720
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
0
votes
2
replies
1.5k
views
Removing constant/zero columns for PCA?
R pca
updated 7 months ago by ★ 27k • written 7 months ago by ▴ 150
1
vote
4
replies
720
views
How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
7 months ago by bioinfo ▴ 150
0
votes
0
replies
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
votes
0
replies
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
1
vote
8
replies
2.0k
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
7 months ago by bioinfo ▴ 150
0
votes
1
reply
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
votes
1
reply
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
votes
0
replies
679
views
Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
8 months ago by bioinfo ▴ 150
5
votes
2
replies
679
views
How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
8 months ago by bioinfo ▴ 150
0
votes
0
replies
936
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
1
reply
936
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
0
replies
936
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
1
reply
936
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
8
replies
936
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
8 months ago by bioinfo ▴ 150
1
vote
1
reply
597
views
Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 8 months ago by 142k • written 8 months ago by ▴ 150
0
votes
0
replies
987
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
0
votes
1
reply
987
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
139 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6