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142
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Regression and scaling in scanpy
scanpy
10 days ago by bioinfo ▴ 150
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588
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
11 weeks ago by bioinfo ▴ 150
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1
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429
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When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 4 months ago by 4.7k • written 4 months ago by ▴ 150
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1
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327
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How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 5 months ago by 4.7k • written 5 months ago by ▴ 150
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189
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How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
5 months ago by bioinfo ▴ 150
2
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1
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316
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Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 5 months ago by ▴ 940 • written 5 months ago by ▴ 150
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327
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
5 months ago by bioinfo ▴ 150
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2
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327
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How can I import an unindexed human gtf file in IGV?
igv
5 months ago by bioinfo ▴ 150
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0
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674
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 months ago by bioinfo ▴ 150
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1
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674
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 months ago by bioinfo ▴ 150
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1
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674
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 months ago by bioinfo ▴ 150
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6
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674
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Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
6 months ago by bioinfo ▴ 150
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1
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466
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Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
7 months ago by bioinfo ▴ 150
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3
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466
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Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 7 months ago by 148k • written 7 months ago by ▴ 150
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0
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588
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
7 months ago by bioinfo ▴ 150
2
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3
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588
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Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
11 weeks ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: How should I make kallisto indexes?
7 months ago by bioinfo ▴ 150
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5
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1.2k
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How should I make kallisto indexes?
kallisto
updated 7 months ago by ★ 7.0k • written 8 months ago by ▴ 150
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0
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468
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
8 months ago by bioinfo ▴ 150
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0
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579
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Comment: Comment: How to row normalize a matrixplot?
8 months ago by bioinfo ▴ 150
1
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2
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468
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
8 months ago by bioinfo ▴ 150
2
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2
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579
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How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
8 months ago by bioinfo ▴ 150
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1
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764
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How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 8 months ago by 44k • written 8 months ago by ▴ 150
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0
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596
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
8 months ago by bioinfo ▴ 150
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1
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596
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
8 months ago by bioinfo ▴ 150
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5
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596
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 8 months ago by 44k • written 8 months ago by ▴ 150
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1
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999
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Comment: Comment: How does kallisto handle multi mapped reads?
10 months ago by bioinfo ▴ 150
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1
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999
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Comment: Comment: How does kallisto handle multi mapped reads?
10 months ago by bioinfo ▴ 150
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7
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999
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How does kallisto handle multi mapped reads?
kallisto
updated 10 months ago by ★ 7.0k • written 10 months ago by ▴ 150
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2
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663
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How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 8 months ago by • 0 • written 10 months ago by ▴ 150
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0
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465
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How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
12 months ago by bioinfo ▴ 150
4
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2
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930
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 13 months ago by 20k • written 13 months ago by ▴ 150
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1
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1.4k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
13 months ago by bioinfo ▴ 150
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1
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1.4k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
13 months ago by bioinfo ▴ 150
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1
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1.4k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
13 months ago by bioinfo ▴ 150
3
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7
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1.4k
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How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 8 months ago by 44k • written 13 months ago by ▴ 150
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0
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976
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Comment: Comment: Why am I getting different results with kallisto?
13 months ago by bioinfo ▴ 150
0
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1
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976
views
Comment: Comment: Why am I getting different results with kallisto?
13 months ago by bioinfo ▴ 150
0
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1
reply
976
views
Comment: Comment: Why am I getting different results with kallisto?
13 months ago by bioinfo ▴ 150
3
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4
replies
976
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Why am I getting different results with kallisto?
kallisto
13 months ago by bioinfo ▴ 150
0
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1
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758
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Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
13 months ago by bioinfo ▴ 150
2
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3
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758
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Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 13 months ago by 148k • written 13 months ago by ▴ 150
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0
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495
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How to convert dataframe properly to anndata?
single-cell python anndata
updated 8 months ago by 44k • written 14 months ago by ▴ 150
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0
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467
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How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 8 months ago by 44k • written 14 months ago by ▴ 150
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0
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440
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How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 8 months ago by 44k • written 14 months ago by ▴ 150
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0
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1.0k
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
14 months ago by bioinfo ▴ 150
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1
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1.0k
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
14 months ago by bioinfo ▴ 150
0
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2
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2.5k
views
Removing constant/zero columns for PCA?
R pca
updated 14 months ago by ★ 28k • written 14 months ago by ▴ 150
1
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4
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1.0k
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How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
14 months ago by bioinfo ▴ 150
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0
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3.5k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
15 months ago by bioinfo ▴ 150
153 results • Page 1 of 4
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