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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
15 months ago by bioinfo ▴ 150
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8
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3.5k
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How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
15 months ago by bioinfo ▴ 150
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3.5k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
15 months ago by bioinfo ▴ 150
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1
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3.5k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
15 months ago by bioinfo ▴ 150
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0
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871
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Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
15 months ago by bioinfo ▴ 150
5
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2
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871
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How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
15 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
15 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
15 months ago by bioinfo ▴ 150
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0
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1.2k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
15 months ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
15 months ago by bioinfo ▴ 150
0
votes
8
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1.2k
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
15 months ago by bioinfo ▴ 150
1
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1
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861
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Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 16 months ago by 148k • written 16 months ago by ▴ 150
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1.4k
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Comment: Comment: Questions about per base sequence quality and GC content.
16 months ago by bioinfo ▴ 150
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1
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1.4k
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Comment: Comment: Questions about per base sequence quality and GC content.
16 months ago by bioinfo ▴ 150
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1.6k
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Comment: Comment: How to choose threshold for scrublet?
16 months ago by bioinfo ▴ 150
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2
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1.6k
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How to choose threshold for scrublet?
rna-seq scrublet
16 months ago by bioinfo ▴ 150
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0
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1.4k
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Comment: Comment: Questions about per base sequence quality and GC content.
16 months ago by bioinfo ▴ 150
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5
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1.4k
views
Questions about per base sequence quality and GC content.
fastqc fastq seq RNA
16 months ago by bioinfo ▴ 150
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0
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966
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Comment: Comment: How to assign gene names to ensembl IDs if species not in Biomart
16 months ago by bioinfo ▴ 150
3
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3
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966
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How to assign gene names to ensembl IDs if species not in Biomart
biomart ensembl
16 months ago by bioinfo ▴ 150
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2
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3.0k
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Comment: Comment: Why do I need to sort and index gtf file for IGV?
17 months ago by bioinfo ▴ 150
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4
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3.0k
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Why do I need to sort and index gtf file for IGV?
igv
updated 17 months ago by 86k • written 17 months ago by ▴ 150
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897
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Comment: Comment: Where can I find the --chromosomes file for kallisto?
17 months ago by bioinfo ▴ 150
3
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3
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897
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Where can I find the --chromosomes file for kallisto?
kallisto
updated 17 months ago by 148k • written 17 months ago by ▴ 150
3
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2
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797
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How to figure out adapter sequences in RNA seq?
adapters rna-seq
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 150
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0
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496
views
How does kallisto genomebam handle multi mapping reads?
kallisto
updated 18 months ago by 44k • written 18 months ago by ▴ 150
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0
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1.0k
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Comment: Comment: Does adding reads cause batch effects?
18 months ago by bioinfo ▴ 150
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1
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1.0k
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Comment: Comment: Does adding reads cause batch effects?
18 months ago by bioinfo ▴ 150
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5
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1.0k
views
Does adding reads cause batch effects?
kallisto RNAseq
18 months ago by bioinfo ▴ 150
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0
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635
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Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy hashtag hashsolo RNAseq
20 months ago by bioinfo ▴ 150
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0
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1.7k
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
20 months ago by bioinfo ▴ 150
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1
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1.7k
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
20 months ago by bioinfo ▴ 150
1
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3
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1.7k
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How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger. seq hashsolo rna
20 months ago by bioinfo ▴ 150
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0
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796
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Comment: Comment: Do I need to specify the introns on the gtf file for cellranger?
20 months ago by bioinfo ▴ 150
0
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2
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796
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Do I need to specify the introns on the gtf file for cellranger?
fasta gtf cellranger scRNAseq
updated 20 months ago by 148k • written 20 months ago by ▴ 150
3
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1
reply
776
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2 rna-seq
updated 20 months ago by 13k • written 20 months ago by ▴ 150
1
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1
reply
711
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 21 months ago by ★ 7.0k • written 21 months ago by ▴ 150
0
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0
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448
views
How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 21 months ago by 148k • written 21 months ago by ▴ 150
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0
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1.8k
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Comment: Comment: How to add gene entry to gtf file?
22 months ago by bioinfo ▴ 150
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0
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1.8k
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Comment: Comment: How to add gene entry to gtf file?
22 months ago by bioinfo ▴ 150
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2
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1.8k
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Comment: Comment: How to add gene entry to gtf file?
22 months ago by bioinfo ▴ 150
2
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5
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1.8k
views
How to add gene entry to gtf file?
single-cell cellranger
updated 22 months ago by 44k • written 22 months ago by ▴ 150
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0
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1.5k
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
22 months ago by bioinfo ▴ 150
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1
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1.5k
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
22 months ago by bioinfo ▴ 150
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5
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1.4k
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Problem with tximport and plasmodium falciparum
tximport
22 months ago by bioinfo ▴ 150
2
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0
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1.4k
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Answer: Answer: Problem with tximport and plasmodium falciparum
22 months ago by bioinfo ▴ 150
1
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3
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2.6k
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
22 months ago by bioinfo ▴ 150
1
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0
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2.6k
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Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
22 months ago by bioinfo ▴ 150
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0
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6.2k
views
Comment: Comment: Encountering error when loading scanpy?
22 months ago by bioinfo ▴ 150
1
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5
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1.5k
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
22 months ago by bioinfo ▴ 150
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