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21
votes
9
replies
14k
views
8 follow
List all available databases for ANNOVAR
annovar
updated 19 months ago by • 0 • written 8.8 years ago by ★ 2.6k
0
votes
0
replies
1.8k
views
Comment: C: R corrplot: combining pvalues and correlations (Brainstorm Figure)
4.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
1.8k
views
Comment: C: R corrplot: combining pvalues and correlations (Brainstorm Figure)
4.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
4
replies
1.8k
views
R corrplot: combining pvalues and correlations (Brainstorm Figure)
R corrplot
4.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
0
replies
1.2k
views
Comment: C: Determine Reading Frame from Exon Genomic Positions (rMATS)
4.5 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
2
replies
1.2k
views
Determine Reading Frame from Exon Genomic Positions (rMATS)
RNA-Seq rmats genome
updated 4.5 years ago by 14k • written 4.5 years ago by ★ 2.6k
0
votes
1
reply
3.5k
views
Comment: C: Ensembl FTP Mirror in USA? Slow Downloads
4.6 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
3.5k
views
Comment: C: Ensembl FTP Mirror in USA? Slow Downloads
4.6 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
3
votes
8
replies
3.5k
views
Ensembl FTP Mirror in USA? Slow Downloads
ensembl vep
updated 2.2 years ago by • 0 • written 4.6 years ago by ★ 2.6k
0
votes
0
replies
1.7k
views
Comment: C: Real World BEDtools. Practical Examples for Variant Filtering and Gene Annotatio
4.7 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
1
reply
2.6k
views
Rna-Seq Cancer Cell Line, Hg19 Or Cancer Cell Line Genome?
rna-seq hg19 cancer
updated 4.8 years ago by 20 • written 11.0 years ago by ★ 2.6k
0
votes
1
reply
939
views
MarkDups takes much longer than expected???
MarkDup Sambamba
updated 5.0 years ago by 20 • written 5.1 years ago by ★ 2.6k
8
votes
9
replies
4.1k
views
Alternatives to CNVnator?
CNV copy number variation
updated 5.0 years ago by • 0 • written 5.5 years ago by ★ 2.6k
0
votes
0
replies
911
views
BQSR BD/BI Tags into integer values?
BQSR GATK
updated 5.2 years ago by 20 • written 5.3 years ago by ★ 2.6k
1
vote
1
reply
3.0k
views
Mouse Strains in mm10/GRCm38 dbSNP 142?
hisat2 mm10 mouse dbsnp
updated 5.2 years ago by 13k • written 5.2 years ago by ★ 2.6k
0
votes
1
reply
4.1k
views
Comment: C: Identify chip platform given probe ID
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.6k
0
votes
0
replies
2.2k
views
Comment: C: Missing MQ tag from bwa mem alignments
5.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
2
replies
2.2k
views
Missing MQ tag from bwa mem alignments
bwa mem wgs alignment
updated 5.3 years ago by 4.1k • written 5.3 years ago by ★ 2.6k
0
votes
0
replies
2.7k
views
Answer: A: lumpy for cnv detection
5.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
0
replies
4.1k
views
Comment: C: Identify chip platform given probe ID
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.6k
0
votes
0
replies
7.3k
views
Answer: A: Is GRCh37 and hg19 are the same?
5.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
2
votes
1
reply
5.0k
views
Answer: A: How To Learn Pipeline Development?
updated 5.3 years ago by 45k • written 11.1 years ago by ★ 2.6k
5
votes
4
replies
3.0k
views
How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
haploid gatk haplotype caller snps
updated 5.4 years ago by ▴ 10 • written 7.2 years ago by ★ 2.6k
0
votes
0
replies
3.7k
views
Comment: C: Optimizing samtools shell scripts. How to make code run faster
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 2.6k
0
votes
1
reply
941
views
BED to HDF5 in Python. Simple Script?
python hdf5 bed
5.5 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
8
votes
4
replies
1.6k
views
Samtools view -f "OR" operator possible?
samtools
updated 5.8 years ago by 15k • written 5.8 years ago by ★ 2.6k
3
votes
6
replies
9.3k
views
Read binary Illumina GTC files (1000 genomes)
illumina omni microarry gtc binary
updated 5.8 years ago by ▴ 10 • written 9.1 years ago by ★ 2.6k
4
votes
6
replies
6.2k
views
BWA MEM Definition of a Primary Alignment
alignment bwa mem wgs hts
updated 3.9 years ago by ★ 2.9k • written 5.8 years ago by ★ 2.6k
0
votes
1
reply
6.2k
views
Comment: C: BWA MEM Definition of a Primary Alignment
5.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
5
votes
4
replies
9.2k
views
ChromHMM 15 State Descriptions (Genic Enhancer)
ChromHMM ENCODE Roadmap Epigenomics
updated 5.8 years ago by ▴ 130 • written 8.6 years ago by ★ 2.6k
6
votes
6
replies
4.0k
views
6 follow
Resources to learn htslib and C/C++
cpp htslib c
updated 22 months ago by 45k • written 8.4 years ago by ★ 2.6k
1
vote
2
replies
2.4k
views
How to make an Exon Junction BED file from ENSEMBL
exon junction
updated 6.0 years ago by 20 • written 6.1 years ago by ★ 2.6k
3
votes
2
replies
3.9k
views
GiaB SV Calls for NIST:HG001/NA12878: What's the reference build?
CNV giab nist deletion
updated 6.0 years ago by ▴ 10 • written 8.0 years ago by ★ 2.6k
0
votes
0
replies
2.4k
views
Comment: C: How to make an Exon Junction BED file from ENSEMBL
6.1 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
2
votes
1
reply
1.5k
views
Allele Age Software (Mutational Age)
allele-age mutational-age
updated 22 months ago by 45k • written 6.1 years ago by ★ 2.6k
0
votes
0
replies
4.7k
views
Comment: C: Building A Splice Junction Library For Aligning Mrna Against The Rat Genome: Chr
6.1 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
2
replies
2.2k
views
RNAseq Normalization for eQTL Mapping?
eqtl RNA-Seq qtl genetic mapping
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
2
replies
8.0k
views
10X scRNA-seq: Demultiplex into Samples with I1, R1, and R2 FASTQs
10x single-cell RNA-Seq demultiplex
updated 6.3 years ago by 14k • written 6.3 years ago by ★ 2.6k
5
votes
7
replies
3.4k
views
Concat VCFs with some shared samples
vcf concat bcftools
updated 6.3 years ago by ▴ 120 • written 6.4 years ago by ★ 2.6k
4
votes
2
replies
3.3k
views
PennCNV Segmentation Fault
penncnv
updated 2.6 years ago by 45k • written 9.4 years ago by ★ 2.6k
0
votes
0
replies
1.4k
views
Comment: C: Documentation on VCI files? Or convert VCI to VCF?
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
0
replies
1.4k
views
Comment: C: Documentation on VCI files? Or convert VCI to VCF?
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
3
votes
4
replies
1.4k
views
Documentation on VCI files? Or convert VCI to VCF?
VCI VCF
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
1
reply
3.4k
views
Comment: C: Concat VCFs with some shared samples
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
3.6k
views
Comment: C: 1000Genome SV integrated map's power for SV filter
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
2
votes
1
reply
3.3k
views
Comment: C: Approaches for SV calling from De Novo assembly
updated 6.6 years ago by 45k • written 8.8 years ago by ★ 2.6k
2
votes
1
reply
2.8k
views
Answer: A: Existing methods to evaluate the performance of SV/CNV calling tools
updated 6.6 years ago by 45k • written 8.9 years ago by ★ 2.6k
8
votes
5
replies
11k
views
cannot import pysam. Module has no attribute error
pysam python samtools api
updated 6.6 years ago by 45k • written 9.7 years ago by ★ 2.6k
0
votes
2
replies
3.8k
views
SNP + INDEL Merging Guidelines
VCF SNP INDEL Merging
6.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
6.1k
views
Comment: C: When should you left-align INDELs (and why?)
6.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
242 results • Page 1 of 5
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