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Comment: Comment: Hypergeometric test equivalent for difference between two sets of genes list ins
2.2 years ago by Ivan ▴ 60
0
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2
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869
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Hypergeometric test equivalent for difference between two sets of genes list instead of intersection
hypergeometric test
2.2 years ago by Ivan ▴ 60
0
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1
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981
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Comment: Comment: Snakemake wildcards overwriting one another
2.3 years ago by Ivan ▴ 60
1
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3
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981
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Snakemake wildcards overwriting one another
snakemake
updated 2.3 years ago by ▴ 520 • written 2.3 years ago by ▴ 60
0
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0
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695
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Comment: Comment: Can read fragment size be shorter than read length size?
2.3 years ago by Ivan ▴ 60
2
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2
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695
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Can read fragment size be shorter than read length size?
NGS samtools
updated 17 months ago by 44k • written 2.3 years ago by ▴ 60
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0
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2.3k
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
2.4 years ago by Ivan ▴ 60
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1
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2.3k
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Comment: Comment: Pass a python dictionary as a snakemake variable (input and output)
2.4 years ago by Ivan ▴ 60
0
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4
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2.3k
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Pass a python dictionary as a snakemake variable (input and output)
python snakemake widlcards
2.4 years ago by Ivan ▴ 60
4
votes
2
replies
719
views
Extract all regions in a genome that are not assembly gaps from a FASTA file quickly
fasta
2.4 years ago by Ivan ▴ 60
2
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0
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719
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Answer: Answer: Extract all regions in a genome that are not assembly gaps from a FASTA file qui
2.4 years ago by Ivan ▴ 60
1
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2
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907
views
Determining which chromosome is the sex chromosome from FASTA file
sex chromosomes genome reference fasta
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 60
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1
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1.7k
views
Answer: Answer: How to automate bwa, samtools, bcftools upto variant calling steps without savin
2.7 years ago by Ivan ▴ 60
0
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1
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1.4k
views
Align split-reads with bowtie-2 using snakemake
snakemake bowtie2
2.8 years ago by Ivan ▴ 60
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0
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1.4k
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Answer: Answer: Align split-reads with bowtie-2 using snakemake
2.8 years ago by Ivan ▴ 60
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0
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1.7k
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Comment: Comment: Using snakemake to download split-reads by SRA number
2.8 years ago by Ivan ▴ 60
4
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2
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1.7k
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Using snakemake to download split-reads by SRA number
snakemake sratoolkit
2.8 years ago by Ivan ▴ 60
0
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1
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2.1k
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Comment: Comment: Executing snakemake array jobs on cluster
2.8 years ago by Ivan ▴ 60
5
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3
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2.1k
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Executing snakemake array jobs on cluster
snakemake cluster
updated 2.8 years ago by 15k • written 2.8 years ago by ▴ 60
2
votes
2
replies
1.1k
views
Extract only locations of annotated genes from a reference genome
annotation RefSeq coding-genes
updated 2.9 years ago by ▴ 760 • written 2.9 years ago by ▴ 60
1
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3
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1.8k
views
Problem with installing CNVnator
centOS samtools cnvnator linux
3.0 years ago by Ivan ▴ 60
1
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0
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1.8k
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Answer: Answer: Problem with installing CNVnator
3.0 years ago by Ivan ▴ 60
0
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0
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1.8k
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Comment: Comment: Problem with installing CNVnator
3.0 years ago by Ivan ▴ 60
0
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0
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760
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Problem with using flagstat after bowtie2 alignment
bowtie2 samtools flagstat
3.0 years ago by Ivan ▴ 60
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1
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1.4k
views
Comment: Comment: Problem with bowtie2 alignment - libtbb.so.2
3.0 years ago by Ivan ▴ 60
1
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3
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1.4k
views
Problem with bowtie2 alignment - libtbb.so.2
shell bowtie2 samtools
updated 2.4 years ago by 44k • written 3.0 years ago by ▴ 60
2
votes
1
reply
801
views
Connect SRA Bio Sample to Run
SRA sratoolkit
updated 3.0 years ago by ★ 3.8k • written 3.0 years ago by ▴ 60
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