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Comment: C: About calculating the GC content in a sliding window
4.7 years ago by jon.brate ▴ 310
0
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1
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6.0k
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Comment: C: About calculating the GC content in a sliding window
4.7 years ago by jon.brate ▴ 310
2
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5
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6.0k
views
About calculating the GC content in a sliding window
gccontent bedtools
updated 2.8 years ago by ▴ 160 • written 4.7 years ago by ▴ 310
0
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0
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1.8k
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Comment: C: How to create alignment of UTR's for use in TargetScan?
5.9 years ago by jon.brate ▴ 310
3
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2
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1.8k
views
How to create alignment of UTR's for use in TargetScan?
mirna targetscan
6.1 years ago by jon.brate ▴ 310
0
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1
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2.8k
views
Comment: C: Trying to get access to the Trinity R commands...
6.3 years ago by jon.brate ▴ 310
0
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0
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2.8k
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Comment: C: Trying to get access to the Trinity R commands...
6.3 years ago by jon.brate ▴ 310
1
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5
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2.8k
views
Trying to get access to the Trinity R commands...
Trinity R rna-seq
6.3 years ago by jon.brate ▴ 310
0
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0
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3.6k
views
Comment: C: Error Runnin miRDeep2
6.3 years ago by jon.brate ▴ 310
0
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5
replies
2.8k
views
MaSuRCA failed to extract the best long reads
assembly MaSuRCA
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 310
0
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0
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4.9k
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Comment: C: What is Trimmomatic -validatePairs, and how to use it?
6.9 years ago by jon.brate ▴ 310
0
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1
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4.9k
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Comment: C: What is Trimmomatic -validatePairs, and how to use it?
6.9 years ago by jon.brate ▴ 310
9
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11
replies
4.9k
views
What is Trimmomatic -validatePairs, and how to use it?
trimmomatic
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 310
0
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1
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4.9k
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Comment: C: What is Trimmomatic -validatePairs, and how to use it?
6.9 years ago by jon.brate ▴ 310
0
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1
reply
4.9k
views
Comment: C: What is Trimmomatic -validatePairs, and how to use it?
6.9 years ago by jon.brate ▴ 310
0
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0
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4.9k
views
Comment: C: What is Trimmomatic -validatePairs, and how to use it?
6.9 years ago by jon.brate ▴ 310
0
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1
reply
1.2k
views
Comment: C: Bowtie2 mapping did not finish, can I still use the .sam file?
7.1 years ago by jon.brate ▴ 310
1
vote
3
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1.2k
views
Bowtie2 mapping did not finish, can I still use the .sam file?
bowtie2 bowtie
updated 7.1 years ago by 48k • written 7.1 years ago by ▴ 310
0
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1
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6.3k
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Comment: C: BAM file comparison
7.1 years ago by jon.brate ▴ 310
0
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0
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2.8k
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Comment: C: MaSuRCA failed to extract the best long reads
7.2 years ago by jon.brate ▴ 310
0
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0
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1.9k
views
Can I use Canu corrected reads without Can trim?
canu assembly smartdenovo
7.2 years ago by jon.brate ▴ 310
0
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1
reply
8.0k
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Comment: C: Hybrid assembly PacBio Illumina in 2018 ?
7.2 years ago by jon.brate ▴ 310
0
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1
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8.0k
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Answer: A: Hybrid assembly PacBio Illumina in 2018 ?
7.2 years ago by jon.brate ▴ 310
0
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0
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3.3k
views
Comment: C: LoRDEC hybrid error corrected read usage
7.2 years ago by jon.brate ▴ 310
8
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7
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7.8k
views
6 follow
Forum: Bioinformatic or bioinformatics?
spelling
updated 23 months ago by 45k • written 7.6 years ago by ▴ 310
0
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0
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94k
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Comment: C: What Does Samtools Flagstat Results Mean?
7.9 years ago by jon.brate ▴ 310
18
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16
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16k
views
10 follow
How to extract the longest isoform from multi fasta file
perl extract fasta python isoform
updated 13 months ago by • 0 • written 10.8 years ago by ▴ 310
1
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1
reply
2.1k
views
Comment: C: Custom genome and tophat
8.4 years ago by jon.brate ▴ 310
2
votes
1
reply
1.4k
views
Does the order of sequences in a blast database matter?
blast
updated 8.6 years ago by ▴ 570 • written 8.6 years ago by ▴ 310
0
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0
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5.8k
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Comment: C: How to get different colors on coverage tracks in IGV
8.7 years ago by jon.brate ▴ 310
2
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2
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5.8k
views
How to get different colors on coverage tracks in IGV
IGV RNA-Seq
updated 8.7 years ago by 9.0k • written 8.7 years ago by ▴ 310
0
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1
reply
3.6k
views
Answer: A: Error Runnin miRDeep2
8.9 years ago by jon.brate ▴ 310
29
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12
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16k
views
Is the Picard SortSam queryname or coordinate equivalent to samtools sort -n?
samtools picard sort
updated 9.1 years ago by 13k • written 10.9 years ago by ▴ 310
6
votes
15
replies
5.8k
views
coverageBed: what am I doing wrong?
bedtools coverage bam
updated 9.1 years ago by 12k • written 9.1 years ago by ▴ 310
0
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0
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5.8k
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Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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0
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5.8k
views
Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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2
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5.8k
views
Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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2
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5.8k
views
Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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0
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5.8k
views
Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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0
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5.8k
views
Comment: C: coverageBed: what am I doing wrong?
9.1 years ago by jon.brate ▴ 310
0
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0
replies
37k
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Comment: C: Calculating Gc Content For All Ccds
9.6 years ago by jon.brate ▴ 310
0
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0
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4.1k
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Comment: C: How to define intergenic regions from cufflinks .gtf-file (separate introns from
9.6 years ago by jon.brate ▴ 310
0
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0
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4.1k
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Comment: C: How to define intergenic regions from cufflinks .gtf-file (separate introns from
9.6 years ago by jon.brate ▴ 310
1
vote
3
replies
4.1k
views
How to define intergenic regions from cufflinks .gtf-file (separate introns from intergenic)
cufflinks gtf intergenic
updated 9.6 years ago by 105k • written 9.6 years ago by ▴ 310
0
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1
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5.6k
views
Comment: C: Is it possible (or does it make sense) to display two different gene sets in one
9.6 years ago by jon.brate ▴ 310
2
votes
4
replies
5.6k
views
Is it possible (or does it make sense) to display two different gene sets in one PCA-plot?
deseq2 pca clustering RNA-Seq
updated 9.6 years ago by ★ 9.6k • written 9.6 years ago by ▴ 310
0
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0
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3.0k
views
Comment: C: Does the order of input files matter when mapping paired-end strand specific RNA
10.0 years ago by jon.brate ▴ 310
0
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1
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3.0k
views
Comment: C: Does the order of input files matter when mapping paired-end strand specific RNA
10.0 years ago by jon.brate ▴ 310
1
vote
4
replies
3.0k
views
Does the order of input files matter when mapping paired-end strand specific RNA-seq reads?
mapping RNA-Seq tophat2 bowtie2 illumina
updated 10.0 years ago by 105k • written 10.0 years ago by ▴ 310
2
votes
1
reply
5.0k
views
Need advice: I want to display a heatmap of gene expression based on a dendrogram from the WGCNA package
heatmap clustering RNA-Seq wgcna R
updated 2.2 years ago by 45k • written 10.0 years ago by ▴ 310
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