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Need to specify "--chemistry" argument in "cellranger count"
cellranger-count cellranger
updated 18 months ago by ★ 1.8k • written 2.9 years ago by ▴ 30
0
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1
reply
710
views
Best software to analyze Novogene bulk RNA-seq
RNA-seq bulk
updated 23 months ago by 85k • written 23 months ago by ▴ 30
0
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3
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7.8k
views
Trouble setting "ident" argument in FindMarkers in Seurat
Seurat FindMarkers
updated 2.2 years ago by ▴ 190 • written 2.9 years ago by ▴ 30
0
votes
1
reply
567
views
How best to choose receptors to target when planning a lipid nanoparticle project
nanoparticles rna-seq
updated 2.2 years ago by 9.0k • written 2.2 years ago by ▴ 30
0
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1
reply
555
views
RNA-seq data from human patients with both GBM and Alzheimer's
alzheimers rna-seq gbm
updated 2.2 years ago by ▴ 430 • written 2.2 years ago by ▴ 30
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0
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359
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Recurrent human GBM single-cell RNA-seq data
rna-seq gbm
2.3 years ago by Aaron ▴ 30
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0
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338
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single-cell Alzheimer's data from studies involving anti-herpetic drugs
alzheimers single-cell
2.4 years ago by Aaron ▴ 30
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0
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7.5k
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Comment: Comment: scRNAseq analysis - h5ad file conversion to Seurat format
2.4 years ago by Aaron ▴ 30
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0
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394
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Inferring tumor mutational burden from RNA-seq data
tumor burden mutational rna-seq
2.4 years ago by Aaron ▴ 30
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0
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728
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Comment: Comment: Cytokine/ Growth factor responsive gene list
2.4 years ago by Aaron ▴ 30
0
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1
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800
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Comment: Comment: Identifying individual amino acids or domains in Alphafold predictions
2.5 years ago by Aaron ▴ 30
2
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3
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800
views
Identifying individual amino acids or domains in Alphafold predictions
Alphafold
updated 2.5 years ago by ★ 28k • written 2.5 years ago by ▴ 30
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0
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440
views
scRNA-seq accurately captures expression of mitochondrial genes in neurons?
scRNA-seq
2.5 years ago by Aaron ▴ 30
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0
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2.7k
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Comment: Comment: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
2.8 years ago by Aaron ▴ 30
8
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3
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2.7k
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Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Nebulosa Seurat plot_density
2.8 years ago by Aaron ▴ 30
0
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0
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740
views
Trouble running FindConservedMarkers() after using CellSelector() in Seurat
FindConservedMarkers Seurat
2.8 years ago by Aaron ▴ 30
0
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0
replies
655
views
Trouble running Seurat's FindConservedMarkers()
FindConservedMarkers Seurat
2.9 years ago by Aaron ▴ 30
8
votes
5
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4.4k
views
Annotating UMAP clusters in Seurat with SingleR
Seurat SingleR Scran UMAP annotating-clusters
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 30
0
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0
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4.4k
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Comment: Comment: Annotating UMAP clusters in Seurat with SingleR
2.9 years ago by Aaron ▴ 30
0
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0
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2.8k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
2.9 years ago by Aaron ▴ 30
2
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4
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2.8k
views
Cellranger counts: how to set the value for "--expect-cells" if you can't guess
cellranger-counts cellranger
2.9 years ago by Aaron ▴ 30
0
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0
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2.0k
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
2.9 years ago by Aaron ▴ 30
0
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1
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2.0k
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Comment: Comment: Trouble getting IntegrateData to include specified features in Seurat
2.9 years ago by Aaron ▴ 30
2
votes
4
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2.0k
views
Trouble getting IntegrateData to include specified features in Seurat
Seurat IntegrateData
2.9 years ago by Aaron ▴ 30
0
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0
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1.7k
views
Comment: Comment: Forcing Seurat to include certain genes during integration
2.9 years ago by Aaron ▴ 30
8
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4
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1.7k
views
Forcing Seurat to include certain genes during integration
Integration Seurat
2.9 years ago by Aaron ▴ 30
1
vote
1
reply
1.3k
views
Controlling for mouse and human cell-cycle aspects of data simultaneously in Seurat
PDX Seurat CellCycleScoring
updated 2.9 years ago by ★ 18k • written 2.9 years ago by ▴ 30
0
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0
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1.0k
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Comment: Comment: Separating gene expression data from human tumor and model organism in RNA-seq a
2.9 years ago by Aaron ▴ 30
2
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2
replies
1.0k
views
Separating gene expression data from human tumor and model organism in RNA-seq analysis
PDX-models Seurat
updated 2.9 years ago by 13k • written 2.9 years ago by ▴ 30
0
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0
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2.5k
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Comment: Comment: List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
2.9 years ago by Aaron ▴ 30
2
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3
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2.5k
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List of cell cycle markers to use as reference in CellCycleScoring() in Seurat
Seurat CellCycleScoring
2.9 years ago by Aaron ▴ 30
0
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1
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2.8k
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Comment: Comment: Cellranger counts: how to set the value for "--expect-cells" if you can't guess
2.9 years ago by Aaron ▴ 30
0
votes
0
replies
692
views
Difference between "--solostrand" and "--readstrand" commands in STARsolo
STARsolo
2.9 years ago by Aaron ▴ 30
5
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2
replies
2.6k
views
Improving my STARsolo results
STARsolo
updated 2.9 years ago by ▴ 40 • written 2.9 years ago by ▴ 30
1
vote
3
replies
2.0k
views
Telling apart control and treatment groups in Seurat Visualizations
Visualizations Seurat Data
updated 2.9 years ago by 13k • written 2.9 years ago by ▴ 30
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