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367
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Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated 16 days ago by 7.0k • written 20 days ago by ▴ 20
0
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2
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333
views
Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
wgs hic sequencing nanopore genomics
updated 28 days ago by ★ 1.4k • written 29 days ago by ▴ 20
3
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2
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325
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Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA Genome NCBI
updated 5 weeks ago by 8.7k • written 5 weeks ago by ▴ 20
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0
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284
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Comment: Comment: Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
5 weeks ago by Mark ▴ 20
1
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2
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284
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Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
cli blast
5 weeks ago by Mark ▴ 20
1
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4
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461
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Recommendations for performing Bulk RNA sequencing on non-model organism with poor genome annotation?
RNA-seq
updated 3 months ago by ★ 1.8k • written 3 months ago by ▴ 20
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412
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Comment: Comment: Does it make sense to use scRNAseq for this experiment?
5 months ago by Mark ▴ 20
2
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2
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412
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Does it make sense to use scRNAseq for this experiment?
scRNA-seq
5 months ago by Mark ▴ 20
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0
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389
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Comment: Comment: Is there a program that can predict the sequence of an organisms telomeres just
8 months ago by Mark ▴ 20
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2
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389
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Is there a program that can predict the sequence of an organisms telomeres just from raw sequencing reads
telomeres genomics sequencing
8 months ago by Mark ▴ 20
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0
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1.1k
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Any tools for finding the telomere sequences / lengths directly for nanopore sequencing reads without any prior knowledge of the organism
genomics telomeres reads
12 months ago by Mark ▴ 20
4
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4
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911
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Is there a good software to generate test genomics data?
genomics testing benchmarking
updated 12 months ago by 20k • written 12 months ago by ▴ 20
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0
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1.1k
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For people doing high molecular weight DNA sequencing library prep, do you see a steep drop off in the fragment sizes before and after the library pr…
library-prep sequencing ont nanopore ngs
12 months ago by Mark ▴ 20
0
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0
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972
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Comment: Comment: Best software to get summary statistics from nanopore sequencing runs
12 months ago by Mark ▴ 20
2
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4
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972
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Best software to get summary statistics from nanopore sequencing runs
wgs nanopore sequencing
12 months ago by Mark ▴ 20
2
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1
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516
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Can someone help me explain this part of a lecture regarding gene finding HMM's
HMM gene-prediction
updated 13 months ago by 44k • written 13 months ago by ▴ 20
0
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0
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362
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Any way to predict hormone biosynthesis pathways in understudied organisms?
genomics orthologs biosynthesis-pathway
updated 14 months ago by 44k • written 14 months ago by ▴ 20
4
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5
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1.3k
views
For high quality Telomere to telomere assemblies, is short read polishing still necessary
genome illumina sequencing nanopore wgs
updated 14 months ago by ★ 2.4k • written 14 months ago by ▴ 20
3
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2
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861
views
Best pipeline / resources / tools for whole genome assembly in a haploid organism
haploid sequencing genomics nanopore wgs
updated 14 months ago by ★ 2.0k • written 14 months ago by ▴ 20
3
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2
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1.0k
views
Best pipeline / resources / tools for whole genome assembly
wgs nanopore Sequencing
updated 16 months ago by 10k • written 16 months ago by ▴ 20
3
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3
replies
1.4k
views
how can i filter a sam file from a paf file
paf sam filter
updated 20 months ago by 85k • written 20 months ago by ▴ 20
1
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2
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1.5k
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization sam fasta paf alignment
updated 20 months ago by 7.0k • written 20 months ago by ▴ 20
0
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1
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602
views
Tool to identify mutations following global alignment?
Mutation alignment analysis genomics
updated 21 months ago by ▴ 550 • written 21 months ago by ▴ 20
3
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4
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1.7k
views
Does anyone know how to create a sequence annotation figure like this?
genome gene sequence annotation chromosome
updated 2.9 years ago by • 0 • written 2.9 years ago by ▴ 20
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