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0
votes
2
replies
260
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Is there a way to import a large amount of regions of interest into IGV
sequencing igv genomics ngs
updated 6 days ago by 150k • written 6 days ago by ▴ 30
0
votes
1
reply
238
views
Recommendations for Reference-guided de novo assembly assembly approaches or pipelines?
ont assembly wgs nanopore genomics
updated 13 days ago by ★ 1.5k • written 14 days ago by ▴ 30
1
vote
1
reply
314
views
Subset reads based on Phred-score ranges
phred sequencing ngs
updated 18 days ago by 150k • written 18 days ago by ▴ 30
1
vote
7
replies
553
views
Best way to assess relatedness of eukaryotic organisms from sequencing reads?
phylogenomics phylogenetics ngs kmer sequencing
updated 20 days ago by 7.3k • written 24 days ago by ▴ 30
0
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0
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221
views
DeChat Nanopore read correction with Medaka correction?
ont medaka wgs dechat nanopore
6 weeks ago by Mark ▴ 30
0
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0
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357
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Looking to Simulate Nanopore R10.4.1 and PacBio HiFi whole genome sequencing reads for 3 specific organisms
pacbio nanopore sequencing reads wgs
7 weeks ago by Mark ▴ 30
4
votes
3
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419
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Convert Long Nanopore reads to Illumina Paired end reads
illumina sequencing reads nanopore
updated 8 weeks ago by 165k • written 8 weeks ago by ▴ 30
0
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1
reply
295
views
Question about Kraken2 core_nt vs nt database results.
database kraken2 kmer ncbi
updated 8 weeks ago by 150k • written 8 weeks ago by ▴ 30
0
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1
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357
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Comment: Comment: Kmerfinder database with bacteria, archea, and eukaryotic data
10 weeks ago by Mark ▴ 30
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3
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357
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Kmerfinder database with bacteria, archea, and eukaryotic data
kmer
updated 10 weeks ago by 15k • written 10 weeks ago by ▴ 30
0
votes
2
replies
368
views
Question about metabolic pathway prediction using only DNA sequencing data
metabolism genomics ngs
updated 3 months ago by ▴ 60 • written 3 months ago by ▴ 30
1
vote
1
reply
483
views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated 4 months ago by 7.3k • written 4 months ago by ▴ 30
0
votes
2
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530
views
Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
wgs hic sequencing nanopore genomics
updated 5 months ago by ★ 1.5k • written 5 months ago by ▴ 30
3
votes
2
replies
469
views
Is there an easy way to scrape a whole bunch of NCBI RefSeq FASTA from NCBI?
FASTA Genome NCBI
updated 5 months ago by 8.7k • written 5 months ago by ▴ 30
0
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0
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536
views
Comment: Comment: Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
5 months ago by Mark ▴ 30
1
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2
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536
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Basic question but how can I search the NCBI Nucleotide database using BLAST CLI
cli blast
5 months ago by Mark ▴ 30
1
vote
4
replies
704
views
Recommendations for performing Bulk RNA sequencing on non-model organism with poor genome annotation?
RNA-seq
updated 7 months ago by ★ 1.9k • written 7 months ago by ▴ 30
0
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0
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580
views
Comment: Comment: Does it make sense to use scRNAseq for this experiment?
9 months ago by Mark ▴ 30
2
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2
replies
580
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Does it make sense to use scRNAseq for this experiment?
scRNA-seq
9 months ago by Mark ▴ 30
0
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0
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521
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Comment: Comment: Is there a program that can predict the sequence of an organisms telomeres just
12 months ago by Mark ▴ 30
0
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2
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521
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Is there a program that can predict the sequence of an organisms telomeres just from raw sequencing reads
telomeres genomics sequencing
12 months ago by Mark ▴ 30
0
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0
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1.2k
views
Any tools for finding the telomere sequences / lengths directly for nanopore sequencing reads without any prior knowledge of the organism
genomics telomeres reads
16 months ago by Mark ▴ 30
4
votes
4
replies
1.1k
views
Is there a good software to generate test genomics data?
genomics testing benchmarking
updated 16 months ago by 20k • written 16 months ago by ▴ 30
0
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0
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1.2k
views
For people doing high molecular weight DNA sequencing library prep, do you see a steep drop off in the fragment sizes before and after the library pr…
library-prep sequencing ont nanopore ngs
16 months ago by Mark ▴ 30
0
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0
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1.2k
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Comment: Comment: Best software to get summary statistics from nanopore sequencing runs
16 months ago by Mark ▴ 30
2
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4
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1.2k
views
Best software to get summary statistics from nanopore sequencing runs
wgs nanopore sequencing
16 months ago by Mark ▴ 30
2
votes
1
reply
600
views
Can someone help me explain this part of a lecture regarding gene finding HMM's
HMM gene-prediction
updated 17 months ago by 45k • written 17 months ago by ▴ 30
0
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0
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440
views
Any way to predict hormone biosynthesis pathways in understudied organisms?
genomics orthologs biosynthesis-pathway
updated 18 months ago by 45k • written 18 months ago by ▴ 30
4
votes
5
replies
1.6k
views
For high quality Telomere to telomere assemblies, is short read polishing still necessary
genome illumina sequencing nanopore wgs
updated 18 months ago by ★ 2.4k • written 18 months ago by ▴ 30
3
votes
2
replies
1.1k
views
Best pipeline / resources / tools for whole genome assembly in a haploid organism
haploid sequencing genomics nanopore wgs
updated 18 months ago by ★ 2.1k • written 18 months ago by ▴ 30
3
votes
2
replies
1.3k
views
Best pipeline / resources / tools for whole genome assembly
wgs nanopore Sequencing
updated 21 months ago by 10k • written 21 months ago by ▴ 30
3
votes
3
replies
1.6k
views
how can i filter a sam file from a paf file
paf sam filter
updated 24 months ago by 87k • written 24 months ago by ▴ 30
1
vote
2
replies
1.9k
views
Best way to visualize .paf or .sam alignment to a fasta file
visualization sam fasta paf alignment
updated 2.0 years ago by 7.3k • written 2.0 years ago by ▴ 30
0
votes
1
reply
693
views
Tool to identify mutations following global alignment?
Mutation alignment analysis genomics
updated 2.1 years ago by ▴ 550 • written 2.1 years ago by ▴ 30
3
votes
4
replies
1.9k
views
Does anyone know how to create a sequence annotation figure like this?
genome gene sequence annotation chromosome
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 30
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