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Batch correction for eQTL analysis
batch eqtl batch-correction batch-effect
updated 12 months ago by 45k • written 15 months ago by ▴ 20
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481
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Should I perform eQTL colocalization for just one of eGenes at a time?
colocalization coloc eCaviar eQTL
16 months ago by maximal_life ▴ 20
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540
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How should I adjust covariates in eQTL analysis with an interaction term?
covariate interaction eQTL
19 months ago by maximal_life ▴ 20
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1.2k
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
19 months ago by maximal_life ▴ 20
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31k
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Comment: Comment: removing batch effects using ComBat and SVA
20 months ago by maximal_life ▴ 20
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1
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1.2k
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
20 months ago by maximal_life ▴ 20
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4
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1.2k
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Multiple RNA-seq fastq files for one sample in GEO database
GEO RNA-seq multiplefiles
19 months ago by maximal_life ▴ 20
0
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1
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781
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Should genotype PCA in eQTL analysis be performed using all SNPs? or can be with a subset of SNPs?
genotype eQTL SNP PCA
updated 22 months ago by 4.7k • written 22 months ago by ▴ 20
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1.3k
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Answer: Answer: featureCounts problems with GTF generated by myself
22 months ago by maximal_life ▴ 20
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1
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573
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Is there any way to figure out whole gene networks in the normal tissue solely?
network functional gene pathway
updated 2.0 years ago by 87k • written 2.0 years ago by ▴ 20
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581
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Homer findPeaks output gave me weird 'p-value vs Control'.
peakcalling homer findPeaks pvalue
3.1 years ago by maximal_life ▴ 20
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