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Batch correction for eQTL analysis
batch eqtl batch-correction batch-effect
updated 7 months ago by 44k • written 10 months ago by ▴ 20
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390
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Should I perform eQTL colocalization for just one of eGenes at a time?
colocalization coloc eCaviar eQTL
11 months ago by maximal_life ▴ 20
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435
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How should I adjust covariates in eQTL analysis with an interaction term?
covariate interaction eQTL
15 months ago by maximal_life ▴ 20
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913
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
15 months ago by maximal_life ▴ 20
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30k
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Comment: Comment: removing batch effects using ComBat and SVA
15 months ago by maximal_life ▴ 20
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1
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913
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
15 months ago by maximal_life ▴ 20
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4
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913
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Multiple RNA-seq fastq files for one sample in GEO database
GEO RNA-seq multiplefiles
15 months ago by maximal_life ▴ 20
0
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1
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630
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Should genotype PCA in eQTL analysis be performed using all SNPs? or can be with a subset of SNPs?
genotype eQTL SNP PCA
updated 17 months ago by 4.5k • written 17 months ago by ▴ 20
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725
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Answer: Answer: featureCounts problems with GTF generated by myself
17 months ago by maximal_life ▴ 20
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1
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472
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Is there any way to figure out whole gene networks in the normal tissue solely?
network functional gene pathway
updated 19 months ago by 85k • written 19 months ago by ▴ 20
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453
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Homer findPeaks output gave me weird 'p-value vs Control'.
peakcalling homer findPeaks pvalue
2.7 years ago by maximal_life ▴ 20
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