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Comment: C: Is it correct to merge TCGA mutation data from multiple centers
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 270
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2.7k
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Comment: C: Is it correct to merge TCGA mutation data from multiple centers
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 270
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7
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6.9k
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Where can I find CCLE RNAseq BAM files?
CCLE RNAseq
updated 5.2 years ago by ▴ 20 • written 8.2 years ago by ▴ 270
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2
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PSCBS segmentation file header
CNV parent spcific copy number aroma SNP6
updated 7.5 years ago by ★ 2.8k • written 7.6 years ago by ▴ 270
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Answer: A: download gene expression data
7.7 years ago by vakul.mohanty ▴ 270
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1.9k
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Answer: A: Quick and Dirty Gene Network
7.7 years ago by vakul.mohanty ▴ 270
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2.2k
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Comment: C: variant annotation issue
7.7 years ago by vakul.mohanty ▴ 270
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2.4k
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Answer: A: the question about new TCGA Rnaseq data
7.7 years ago by vakul.mohanty ▴ 270
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Accounting for hidden batch effects in differential expression analysis with DEXseq and Slueth
Batch-effect RNA-Seq Differential-Expression
updated 7 months ago by 44k • written 7.7 years ago by ▴ 270
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2.1k
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Answer: A: RNASeq detection of TERRA
8.0 years ago by vakul.mohanty ▴ 270
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1.9k
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Comment: C: genotype frequency data
8.0 years ago by vakul.mohanty ▴ 270
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1.9k
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Comment: C: genotype frequency data
8.0 years ago by vakul.mohanty ▴ 270
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3.6k
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Comment: C: Adding Multiple readgroups to BAM file
8.0 years ago by vakul.mohanty ▴ 270
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2.5k
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Answer: A: Map snps to its genes
8.1 years ago by vakul.mohanty ▴ 270
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1
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6.3k
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Comment: C: Using not significant differentially expressed genes
8.1 years ago by vakul.mohanty ▴ 270
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6.3k
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Comment: C: Using not significant differentially expressed genes
8.1 years ago by vakul.mohanty ▴ 270
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6.3k
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Answer: A: Using not significant differentially expressed genes
8.1 years ago by vakul.mohanty ▴ 270
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4.5k
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Answer: A: Whole exome sequencing using Bowtie
8.1 years ago by vakul.mohanty ▴ 270
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6.4k
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Answer: A: Precomputed TCGA tumor purity data
8.1 years ago by vakul.mohanty ▴ 270
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3.8k
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Answer: A: Renaming SNPs or SNP matching
8.1 years ago by vakul.mohanty ▴ 270
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2.9k
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Comment: C: Correlation between miRNA and gene expression data from TCGA
8.1 years ago by vakul.mohanty ▴ 270
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1
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2.9k
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Comment: C: Correlation between miRNA and gene expression data from TCGA
8.1 years ago by vakul.mohanty ▴ 270
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2.9k
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Answer: A: Correlation between miRNA and gene expression data from TCGA
8.1 years ago by vakul.mohanty ▴ 270
2
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1
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14k
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Answer: A: How can I get a list of reads(read IDs) from bam files and also list of regions
8.1 years ago by vakul.mohanty ▴ 270
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3.9k
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Answer: A: Statistical test to compare the number of upregulated genes in a subgroup of gen
8.1 years ago by vakul.mohanty ▴ 270
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1
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3.6k
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Comment: C: Get a table of minor an major allele from a vcf file
8.1 years ago by vakul.mohanty ▴ 270
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0
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9.8k
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Answer: A: How Many Reads In A Bam File Are Aligned To a Specific Region
8.2 years ago by vakul.mohanty ▴ 270
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2.9k
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Comment: C: GTEx genotype data
8.2 years ago by vakul.mohanty ▴ 270
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1.9k
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Answer: A: GWAS: how to do hypothesis testing is phenotypes are continuous?
8.2 years ago by vakul.mohanty ▴ 270
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2.1k
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Comment: C: drug response variant datasets
8.2 years ago by vakul.mohanty ▴ 270
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2.0k
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Comment: C: about translocations in the cancer genomes
8.2 years ago by vakul.mohanty ▴ 270
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1.5k
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Answer: A: rsDNA to SNP to supplement recomendations
8.2 years ago by vakul.mohanty ▴ 270
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1.1k
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Comment: C: How can I analysis prognosis according to the CNV of a specific segment on the c
8.2 years ago by vakul.mohanty ▴ 270
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2.4k
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Comment: C: Looking for a cancer dataset for RNA-Seq workshop
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.2k
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Comment: C: Differetial analysis after HTSEq count
8.2 years ago by vakul.mohanty ▴ 270
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3.7k
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Answer: A: Realigner Target Creator
8.2 years ago by vakul.mohanty ▴ 270
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0
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1.2k
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Comment: C: t-statistics for ngs data
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.1k
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Answer: A: GATK allele frequencies
8.2 years ago by vakul.mohanty ▴ 270
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0
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1.8k
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Answer: A: How to find the association between SNP and multiple traits or diseases
8.2 years ago by vakul.mohanty ▴ 270
0
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1
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2.4k
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Answer: A: Looking for a cancer dataset for RNA-Seq workshop
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.0k
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Comment: C: Exome Seq Data analysis - chromosome start and end positions
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.9k
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Comment: C: How to calculate IBD for different ethnicity using plink
8.2 years ago by vakul.mohanty ▴ 270
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0
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4.4k
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Comment: C: Calculating number of reads in a specific region from sam file
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.3k
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Comment: C: How I can extract the sequences of short reads mapped to a particular gene in ge
8.2 years ago by vakul.mohanty ▴ 270
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0
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12k
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Comment: C: Get number of variations in a huge VCF using Tabix?
8.2 years ago by vakul.mohanty ▴ 270
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1
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2.9k
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Comment: C: How to calculate IBD for different ethnicity using plink
8.2 years ago by vakul.mohanty ▴ 270
1
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0
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2.8k
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Comment: C: WGS FASTQ FILE DOWNLOAD
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.7k
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Comment: C: Using PLINK to check SNP variation for a gene
8.2 years ago by vakul.mohanty ▴ 270
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0
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2.9k
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Comment: C: Am I using Tophat2 correctly? Segment-based junction search error keeps coming
8.2 years ago by vakul.mohanty ▴ 270
0
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1
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6.9k
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Comment: C: Where can I find CCLE RNAseq BAM files?
8.2 years ago by vakul.mohanty ▴ 270
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