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Why download GRch38 when my selected filter is only hg19 from ENCODE Data Experiment Matrix?
ENCODE Data Experiment Matrix
5.3 years ago by burcakotlu ▴ 40
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0
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1.1k
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Comment: C: Is there a file information dictionary for files downloaded from ENCODE through
5.3 years ago by burcakotlu ▴ 40
2
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2
replies
1.1k
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Is there a file information dictionary for files downloaded from ENCODE through batch download?
ENCODE
updated 8 months ago by 44k • written 5.3 years ago by ▴ 40
0
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1
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1.8k
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Comment: C: What is the difference between tissues and cell lines in ENCODE>
5.3 years ago by burcakotlu ▴ 40
0
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0
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1.8k
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Comment: C: What is the difference between tissues and cell lines in ENCODE>
5.3 years ago by burcakotlu ▴ 40
2
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5
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1.8k
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What is the difference between tissues and cell lines in ENCODE>
ENCODE cell line
5.3 years ago by burcakotlu ▴ 40
0
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0
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1.8k
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Comment: C: Can there be overlaps in a bigWig or bigBed file?
5.3 years ago by burcakotlu ▴ 40
0
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1
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1.8k
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Comment: C: Can there be overlaps in a bigWig or bigBed file?
5.3 years ago by burcakotlu ▴ 40
2
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5
replies
1.8k
views
Can there be overlaps in a bigWig or bigBed file?
bigBed bigWig
updated 5.3 years ago by 36k • written 5.3 years ago by ▴ 40
0
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1
reply
3.0k
views
How to download *.FPKM-UQ.txt.gz files from TCGA GDC for some certain samples using python?
TCGA GDC python sample
7.3 years ago by burcakotlu ▴ 40
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0
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3.0k
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Answer: A: How to download *.FPKM-UQ.txt.gz files from TCGA GDC for some certain samples u
7.3 years ago by burcakotlu ▴ 40
0
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0
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2.2k
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Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
7.9 years ago by burcakotlu ▴ 40
3
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6
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2.2k
views
Calculate pairwise LD for two given genomic loci (not rsIDs)?
pairwise LD two given genomic loci
updated 7.9 years ago by ★ 2.4k • written 7.9 years ago by ▴ 40
0
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1
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2.2k
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Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
7.9 years ago by burcakotlu ▴ 40
0
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1
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2.2k
views
Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
7.9 years ago by burcakotlu ▴ 40
0
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0
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1.8k
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Getting DNA sequences by ncbi eutils for a specific assembly e.g.: hg19, hg38, GRCh37.p13 or GRCh38.p6?
ncbi eutils efetch dna sequences
8.0 years ago by burcakotlu ▴ 40
2
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1
reply
1.8k
views
Can we get gene information (such as gene HUGO symbol, molecular consequences, gene RefSeq Id) for a given rsID using ncbi eutils?
rsID gene symbol gene Refseq ID ncbi eutils
8.1 years ago by burcakotlu ▴ 40
0
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1
reply
1.8k
views
Getting assembly of an rsID using ncbi eutils?
assembly rsId ncbi eutils
8.1 years ago by burcakotlu ▴ 40
0
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0
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1.8k
views
Comment: C: Having problem in getting rsIDs in a given gene interval using NCBI etuils!
8.1 years ago by burcakotlu ▴ 40
0
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0
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1.8k
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Comment: C: Having problem in getting rsIDs in a given gene interval using NCBI etuils!
8.1 years ago by burcakotlu ▴ 40
0
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2
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1.8k
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Comment: A: Having problem in getting rsIDs in a given gene interval using NCBI etuils!
8.1 years ago by burcakotlu ▴ 40
1
vote
6
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1.8k
views
Having problem in getting rsIDs in a given gene interval using NCBI etuils!
ncbi eutils getting rsIDs in a
8.1 years ago by burcakotlu ▴ 40
6
votes
4
replies
4.5k
views
Getting Sequences Of A Given Chrnumber, Start And End Positions For Grch37/Hg19 Using Eutils In Java
java
updated 8.5 years ago by ▴ 90 • written 10.8 years ago by ▴ 40
3
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4
replies
3.1k
views
Having problem with NCBI remap.pl
NCBI remap
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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1
reply
3.2k
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remaping rs386000 from GRCh38 to GRCh37.p13 using NCBI remap_api.pl
REMAP NCBI
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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0
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1.8k
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Is there a file for AssemblyName 2 RefSeq Assembly Accession (ID) for homo sapiens?
Accession RefSeq NCBI AssemblyName
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
1
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0
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3.1k
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Answer: Answer: Having problem with NCBI remap.pl
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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1
reply
3.1k
views
Comment: Comment: Having problem with NCBI remap.pl
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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0
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4.1k
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Comment: Comment: Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(rea
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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0
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4.1k
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Comment: Comment: Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(rea
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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0
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4.1k
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Comment: Comment: Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(rea
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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1
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4.1k
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Comment: Comment: Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(rea
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
1
vote
6
replies
4.1k
views
Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(reader, Rs.class).getValue(); "
efetch unmarshal
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 40
0
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0
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4.1k
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Comment: A: Is there a NCBI eutils or something else to liftover or remap GRCh37.p13 coordin
10.3 years ago by burcakotlu ▴ 40
4
votes
2
replies
4.1k
views
Is there a NCBI eutils or something else to liftover or remap GRCh37.p13 coordinates to GRCh38 to be called from java?
java remap liftover eutils
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 40
1
vote
1
reply
2.1k
views
How To Parse Esearch Xml Output In Java?
java entrez
updated 10.8 years ago by 164k • written 10.8 years ago by ▴ 40
0
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0
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3.5k
views
Comment: C: How To Get A Dbsnp Data From Java?
10.8 years ago by burcakotlu ▴ 40
0
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0
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3.8k
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Comment: C: Finding Rsids Of Snps For A Given Chrname, Start And End Positions For Grch37/Hg
10.8 years ago by burcakotlu ▴ 40
0
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0
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3.8k
views
Comment: C: Finding Rsids Of Snps For A Given Chrname, Start And End Positions For Grch37/Hg
10.8 years ago by burcakotlu ▴ 40
2
votes
3
replies
3.8k
views
Finding Rsids Of Snps For A Given Chrname, Start And End Positions For Grch37/Hg19
hg19 java eutils
updated 10.8 years ago by 164k • written 10.8 years ago by ▴ 40
0
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0
replies
4.5k
views
Comment: C: Getting Sequences Of A Given Chrnumber, Start And End Positions For Grch37/Hg19
10.8 years ago by burcakotlu ▴ 40
0
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0
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4.5k
views
Comment: C: Getting Sequences Of A Given Chrnumber, Start And End Positions For Grch37/Hg19
10.8 years ago by burcakotlu ▴ 40
0
votes
0
replies
20k
views
Comment: C: How To Fetch Genomics Sequence Using Coordinates In Biopython
10.8 years ago by burcakotlu ▴ 40
0
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1
reply
3.5k
views
Comment: C: How To Get A Dbsnp Data From Java?
10.8 years ago by burcakotlu ▴ 40
0
votes
2
replies
3.5k
views
Comment: C: How To Get A Dbsnp Data From Java?
10.8 years ago by burcakotlu ▴ 40
0
votes
0
replies
3.5k
views
Comment: C: How To Get A Dbsnp Data From Java?
10.8 years ago by burcakotlu ▴ 40
4
votes
8
replies
3.5k
views
How To Get A Dbsnp Data From Java?
dbsnp java
10.8 years ago by burcakotlu ▴ 40
47 results • Page 1 of 1
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