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312
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Comment: Comment: Block size of SSD file storage
4 weeks ago by Denis ▴ 310
3
votes
2
replies
312
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Block size of SSD file storage
snp assembly ssd
updated 4 weeks ago by 150k • written 4 weeks ago by ▴ 310
0
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0
replies
608
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Comment: Comment: Combine GBS and WGS data for variant calling in GWAS analysis
4 months ago by Denis ▴ 310
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0
replies
1.1k
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
4 months ago by Denis ▴ 310
0
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1
reply
1.1k
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
4 months ago by Denis ▴ 310
0
votes
1
reply
1.1k
views
Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
4 months ago by Denis ▴ 310
0
votes
1
reply
1.1k
views
Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
4 months ago by Denis ▴ 310
4
votes
7
replies
1.1k
views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ONT assembly Nanopore preprocessing basecalling
4 months ago by Denis ▴ 310
2
votes
1
reply
813
views
Proper Bowtie2 settings for snp calling applications
Illumina SNP Freebayes Bowtie2
updated 20 months ago by 45k • written 20 months ago by ▴ 310
2
votes
1
reply
1.3k
views
Comment: Comment: Illumina reads preprocessing best practice for snp calling applications
20 months ago by Denis ▴ 310
5
votes
3
replies
1.3k
views
Illumina reads preprocessing best practice for snp calling applications
Illumina snp
updated 11 months ago by • 0 • written 20 months ago by ▴ 310
0
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0
replies
524
views
Correct tRNA genes nomenclature in plant chloroplast genomes
chloroplast tRNA genes genome
22 months ago by Denis ▴ 310
0
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0
replies
635
views
Clade model C of PAML to detect positive selection in coding nucleotide sequences
selection evolution PAML CDS
2.1 years ago by Denis ▴ 310
0
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0
replies
582
views
Application of the branch, site and branch-site models for detecting selection with codeml (PAML)
evolution codeml PAML
2.2 years ago by Denis ▴ 310
0
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0
replies
425
views
Alternatives to DendroCypher tool for large trees labeling
selection PAML codeml pressure
2.2 years ago by Denis ▴ 310
0
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1
reply
1.5k
views
Comment: Comment: Phylogeny inference on complete chloroplast genomes with IQ-TREE software
2.2 years ago by Denis ▴ 310
3
votes
3
replies
1.5k
views
Phylogeny inference on complete chloroplast genomes with IQ-TREE software
IQ-TREE genomics phylogenetics
updated 2.2 years ago by ★ 1.5k • written 2.2 years ago by ▴ 310
11
votes
6
replies
8.7k
views
6 follow
Making nice plots based on the different metrics from VCF file
snp R genome
updated 2.4 years ago by ▴ 290 • written 6.3 years ago by ▴ 310
0
votes
0
replies
943
views
Comment: Comment: Advanced search for the sequences on NCBI website
2.7 years ago by Denis ▴ 310
6
votes
2
replies
943
views
Advanced search for the sequences on NCBI website
GenBank NCBI
2.7 years ago by Denis ▴ 310
0
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0
replies
10k
views
Comment: Comment: Remove not polymorphic sites from VCF
3.1 years ago by Denis ▴ 310
0
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0
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555
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Filter out individuals of the multisample VCF file with a high proportion of missing calls by bcftools
SNP VCF missing_data genotyping
3.1 years ago by Denis ▴ 310
0
votes
0
replies
10k
views
Comment: Comment: Remove not polymorphic sites from VCF
3.1 years ago by Denis ▴ 310
0
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1
reply
3.2k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.2 years ago by Denis ▴ 310
0
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1
reply
3.2k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.2 years ago by Denis ▴ 310
0
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0
replies
631
views
Mapping of tag sequences to the reference genome in Tassel 5 GBS v2 Pipeline
genotyping Genotyping-by-sequencing Tassel Tassel_GBS_Pipeline bowtie2
3.2 years ago by Denis ▴ 310
2
votes
1
reply
772
views
Get rid of multimapped and unmapped reads for snp calling improvement
genome mapping SNP Illumina
updated 3.3 years ago by 87k • written 3.3 years ago by ▴ 310
0
votes
0
replies
786
views
Does the SOAP (BGI) website mirror exist
software SOAP
updated 3.5 years ago by • 0 • written 3.5 years ago by ▴ 310
0
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0
replies
1.4k
views
Comment: Comment: Understandig of some bbmerge command line settings
3.5 years ago by Denis ▴ 310
2
votes
2
replies
1.4k
views
Understandig of some bbmerge command line settings
software amplicons bbmerge
3.5 years ago by Denis ▴ 310
6
votes
7
replies
3.9k
views
Primers trimming from Illumina paired-end reads by BBDuk software
Illumina adapter BBDuk trimming amplicons PCR
updated 3.6 years ago by 150k • written 3.6 years ago by ▴ 310
0
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1
reply
3.9k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.5 years ago by Denis ▴ 310
0
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1
reply
3.9k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.6 years ago by Denis ▴ 310
0
votes
1
reply
3.9k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.6 years ago by Denis ▴ 310
0
votes
0
replies
572
views
Reads preparation steps for amplicon metagenomics
PCR Metagenomics
3.6 years ago by Denis ▴ 310
0
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0
replies
1.8k
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Comment: Comment: de novo annotation of plants genome
3.8 years ago by Denis ▴ 310
0
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0
replies
843
views
Comment: Comment: Is removing of the one trailing nucleotide in Illumina reads necessary step of
3.9 years ago by Denis ▴ 310
3
votes
2
replies
843
views
Is removing of the one trailing nucleotide in Illumina reads necessary step of data preprocessing
Illumina Preprocessing
3.9 years ago by Denis ▴ 310
6
votes
3
replies
10k
views
The fastest way to download a list of SRR accessions from Sequence Read Archive with sratoolkit
sequence genome
updated 4.1 years ago by ▴ 20 • written 5.2 years ago by ▴ 310
0
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0
replies
1.7k
views
Comment: C: Running Mauve on circular genomes
4.2 years ago by Denis ▴ 310
0
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1
reply
1.7k
views
Comment: C: Running Mauve on circular genomes
4.2 years ago by Denis ▴ 310
0
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1
reply
1.7k
views
Comment: C: Running Mauve on circular genomes
4.2 years ago by Denis ▴ 310
0
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0
replies
1.5k
views
Comment: C: Using DESeq2 for DE analysis of microRNA data
4.3 years ago by Denis ▴ 310
6
votes
2
replies
1.5k
views
Using DESeq2 for DE analysis of microRNA data
RNA-Seq R
4.3 years ago by Denis ▴ 310
0
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0
replies
2.5k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.4 years ago by Denis ▴ 310
5
votes
5
replies
2.5k
views
Merge overlapping and adjacent features in the BED file having the same label in the name (4-th) column
genome R
updated 4.4 years ago by 36k • written 4.4 years ago by ▴ 310
0
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0
replies
2.5k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.4 years ago by Denis ▴ 310
0
votes
0
replies
790
views
Circos could not open image.conf error
software error
4.4 years ago by Denis ▴ 310
0
votes
6
replies
1.7k
views
Running Mauve on circular genomes
genome alignment
4.4 years ago by Denis ▴ 310
0
votes
1
reply
5.4k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
4.9 years ago by Denis ▴ 310
146 results • Page 1 of 3
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