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Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
6.2 years ago by Denis ▴ 310
0
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1
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7.9k
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Answer: A: Extract SNPs flanking sequences based on VCF and genome Fasta files
6.3 years ago by Denis ▴ 310
0
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1
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7.9k
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Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
6.3 years ago by Denis ▴ 310
12
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1
reply
5.6k
views
Extract SNPs from VCFfile located in genes based on GFF file information
gene snp
updated 6.3 years ago by 16k • written 6.3 years ago by ▴ 310
6
votes
2
replies
1.9k
views
A way to verify that GFF and Fasta files make a valid pair (came from the same project version)
assembly genome
6.3 years ago by Denis ▴ 310
2
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4
replies
2.0k
views
Multiple testing correction in linear mixed models (MLM) for GWAS
GWAS
updated 6.3 years ago by ▴ 280 • written 6.3 years ago by ▴ 310
0
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1
reply
3.5k
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Comment: C: Different samples order in .ped and phynotype data files
6.3 years ago by Denis ▴ 310
0
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0
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3.5k
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Comment: C: Different samples order in .ped and phynotype data files
6.3 years ago by Denis ▴ 310
0
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0
replies
3.5k
views
Comment: C: Different samples order in .ped and phynotype data files
6.3 years ago by Denis ▴ 310
0
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1
reply
3.5k
views
Comment: C: Different samples order in .ped and phynotype data files
6.3 years ago by Denis ▴ 310
5
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11
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3.5k
views
Different samples order in .ped and phynotype data files
Plink GWAS R
6.3 years ago by Denis ▴ 310
0
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0
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3.5k
views
Comment: C: Number of bases with a certain quality in FASTQ file
6.3 years ago by Denis ▴ 310
0
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1
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3.5k
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Comment: C: Number of bases with a certain quality in FASTQ file
6.4 years ago by Denis ▴ 310
0
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0
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3.5k
views
Comment: C: Number of bases with a certain quality in FASTQ file
6.4 years ago by Denis ▴ 310
0
votes
0
replies
3.5k
views
Comment: C: Number of bases with a certain quality in FASTQ file
6.4 years ago by Denis ▴ 310
7
votes
8
replies
3.5k
views
Number of bases with a certain quality in FASTQ file
next-gen sequencing
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 310
0
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0
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4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
10
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16
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4.7k
views
Demultiplexing of the Illumina PE data
next-gen sequencing
updated 6.4 years ago by 147k • written 6.4 years ago by ▴ 310
0
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1
reply
4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
0
votes
1
reply
4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
0
votes
0
replies
4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
0
votes
1
reply
4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
0
votes
1
reply
4.7k
views
Comment: C: Demultiplexing of the Illumina PE data
6.4 years ago by Denis ▴ 310
0
votes
0
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942
views
Clustering 454 amplicon data
next-gen sequencing SNP
6.5 years ago by Denis ▴ 310
0
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0
replies
5.2k
views
Comment: C: Convert blast tabular output to bed format
6.5 years ago by Denis ▴ 310
4
votes
2
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5.2k
views
Convert blast tabular output to bed format
genome
6.5 years ago by Denis ▴ 310
0
votes
0
replies
1.0k
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Minimal pool size for extreme qtl approach in plants
SNP GWAS QTL genome
6.6 years ago by Denis ▴ 310
2
votes
2
replies
2.7k
views
Analysis of paired-end GBS data
next-gen SNP genome
6.8 years ago by Denis ▴ 310
1
vote
0
replies
2.9k
views
Understanding Best-Hits filtering algorithm in BLAST+ applications
blast alignment
updated 7.0 years ago by 44k • written 7.0 years ago by ▴ 310
0
votes
0
replies
2.8k
views
Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.2 years ago by Denis ▴ 310
0
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1
reply
2.8k
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Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.2 years ago by Denis ▴ 310
0
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1
reply
2.8k
views
Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.2 years ago by Denis ▴ 310
0
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0
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2.8k
views
Comment: C: Optimization of RNA-Seq data mapping with tophat2
7.2 years ago by Denis ▴ 310
7
votes
12
replies
2.8k
views
Optimization of RNA-Seq data mapping with tophat2
RNA-Seq alignment
updated 7.2 years ago by ★ 1.6k • written 7.2 years ago by ▴ 310
0
votes
0
replies
2.9k
views
Comment: C: Software to in silico test restriction enzymes for GBS sequencing and similar ap
7.3 years ago by Denis ▴ 310
3
votes
2
replies
2.9k
views
Software to in silico test restriction enzymes for GBS sequencing and similar approaches
next-gen SNP genome sequencing
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 310
0
votes
0
replies
1.2k
views
Orthologs search in plant plastid genomes
genome gene blast alignment
7.4 years ago by Denis ▴ 310
0
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1
reply
5.5k
views
Comment: C: How to make ortholog table with Reciprocal Best Hit blast (Python?) ?
7.4 years ago by Denis ▴ 310
5
votes
2
replies
1.3k
views
A question about blast algorithm
alignment blast
updated 7.5 years ago by 5.8k • written 7.5 years ago by ▴ 310
1
vote
1
reply
1.3k
views
Metrics to compare different tools for PE reads merging
next-gen
8.1 years ago by Denis ▴ 310
0
votes
1
reply
1.7k
views
Comment: C: Most accurate way to measure adapters quantity in NGS illumina reads
8.1 years ago by Denis ▴ 310
1
vote
3
replies
1.7k
views
Most accurate way to measure adapters quantity in NGS illumina reads
next-gen
updated 8.1 years ago by ★ 2.5k • written 8.1 years ago by ▴ 310
0
votes
1
reply
3.3k
views
Comment: C: Cnv Analysis On Genes
9.4 years ago by Denis ▴ 310
143 results • Page 3 of 3
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